RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 LBRQ14739 615 aaKnown RBP16.2■□□□□ 0.18
CCDC88C-209ENST00000554872 PDK2Q15119 407 aa16.2■□□□□ 0.18
CCDC88C-209ENST00000554872 PRAMEF14Q5SWL7 426 aa16.2■□□□□ 0.18
CCDC88C-209ENST00000554872 ARHGAP36Q6ZRI8 547 aa16.2■□□□□ 0.18
CCDC88C-209ENST00000554872 Q6ZSR6 202 aa16.2■□□□□ 0.18
CCDC88C-209ENST00000554872 TMPRSS7Q7RTY8 843 aa16.2■□□□□ 0.18
CCDC88C-209ENST00000554872 VSIG1Q86XK7 387 aa16.2■□□□□ 0.18
CCDC88C-209ENST00000554872 CHCHD4Q8N4Q1 142 aa16.2■□□□□ 0.18
CCDC88C-209ENST00000554872 CXorf40AQ8TE69 158 aa16.2■□□□□ 0.18
CCDC88C-209ENST00000554872 FAF2Q96CS3 445 aa16.2■□□□□ 0.18
CCDC88C-209ENST00000554872 TBATAQ96M53 351 aa16.2■□□□□ 0.18
CCDC88C-209ENST00000554872 MGME1Q9BQP7 344 aa16.2■□□□□ 0.18
CCDC88C-209ENST00000554872 ETNK2Q9NVF9 386 aa16.2■□□□□ 0.18
CCDC88C-209ENST00000554872 CTTNBP2NLQ9P2B4 639 aa16.2■□□□□ 0.18
CCDC88C-209ENST00000554872 INTUQ9ULD6 942 aa16.2■□□□□ 0.18
CCDC88C-209ENST00000554872 FREM2Q5SZK8 3169 aa16.2■□□□□ 0.18
CCDC88C-209ENST00000554872 IGF2RP11717 2491 aa16.19■□□□□ 0.18
CCDC88C-209ENST00000554872 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP16.19■□□□□ 0.18
CCDC88C-209ENST00000554872 TRAFD1O14545 582 aaPredicted RBP16.19■□□□□ 0.18
CCDC88C-209ENST00000554872 ENC1O14682 589 aa16.19■□□□□ 0.18
CCDC88C-209ENST00000554872 AKR1B10O60218 316 aa16.19■□□□□ 0.18
CCDC88C-209ENST00000554872 SOCS5O75159 536 aa16.19■□□□□ 0.18
CCDC88C-209ENST00000554872 TM7SF2O76062 418 aa16.19■□□□□ 0.18
CCDC88C-209ENST00000554872 PIGNO95427 931 aa16.19■□□□□ 0.18
CCDC88C-209ENST00000554872 LDOC1O95751 146 aaPredicted RBP16.19■□□□□ 0.18
CCDC88C-209ENST00000554872 KRT7P08729 469 aa16.19■□□□□ 0.18
CCDC88C-209ENST00000554872 NME1P15531 152 aaKnown RBP16.19■□□□□ 0.18
CCDC88C-209ENST00000554872 SPINK2P20155 84 aa16.19■□□□□ 0.18
CCDC88C-209ENST00000554872 YPEL5P62699 121 aa16.19■□□□□ 0.18
CCDC88C-209ENST00000554872 BNIP3Q12983 259 aa16.19■□□□□ 0.18
CCDC88C-209ENST00000554872 DPYSL3Q14195 570 aa16.19■□□□□ 0.18
CCDC88C-209ENST00000554872 FZD2Q14332 565 aa16.19■□□□□ 0.18
CCDC88C-209ENST00000554872 PAFAH1B3Q15102 231 aaKnown RBP16.19■□□□□ 0.18
CCDC88C-209ENST00000554872 SMAD1Q15797 465 aaKnown RBP16.19■□□□□ 0.18
CCDC88C-209ENST00000554872 CCNI2Q6ZMN8 369 aaPredicted RBP16.19■□□□□ 0.18
CCDC88C-209ENST00000554872 PTAR1Q7Z6K3 402 aaPredicted RBP16.19■□□□□ 0.18
CCDC88C-209ENST00000554872 PARGQ86W56 976 aa16.19■□□□□ 0.18
CCDC88C-209ENST00000554872 GALNT15Q8N3T1 639 aa16.19■□□□□ 0.18
CCDC88C-209ENST00000554872 NETO2Q8NC67 525 aa16.19■□□□□ 0.18
CCDC88C-209ENST00000554872 RNF214Q8ND24 703 aa16.19■□□□□ 0.18
CCDC88C-209ENST00000554872 MYOCQ99972 504 aa16.19■□□□□ 0.18
CCDC88C-209ENST00000554872 CALN1Q9BXU9 219 aa16.19■□□□□ 0.18
CCDC88C-209ENST00000554872 PACSIN1Q9BY11 444 aa16.19■□□□□ 0.18
CCDC88C-209ENST00000554872 PCDH12Q9NPG4 1184 aa16.19■□□□□ 0.18
CCDC88C-209ENST00000554872 ATP8A1Q9Y2Q0 1164 aa16.19■□□□□ 0.18
CCDC88C-209ENST00000554872 ARID1BQ8NFD5 2236 aaPredicted RBP16.19■□□□□ 0.18
CCDC88C-209ENST00000554872 WDFY3Q8IZQ1 3526 aa16.18■□□□□ 0.18
CCDC88C-209ENST00000554872 MUSKO15146 869 aa16.18■□□□□ 0.18
CCDC88C-209ENST00000554872 HTRA2O43464 458 aaPredicted RBP16.18■□□□□ 0.18
CCDC88C-209ENST00000554872 PIAS2O75928 621 aa16.18■□□□□ 0.18
CCDC88C-209ENST00000554872 CSF2P04141 144 aa16.18■□□□□ 0.18
CCDC88C-209ENST00000554872 XPAP23025 273 aaPredicted RBP16.18■□□□□ 0.18
CCDC88C-209ENST00000554872 DGKAP23743 735 aa16.18■□□□□ 0.18
CCDC88C-209ENST00000554872 ARHGAP25P42331 645 aa16.18■□□□□ 0.18
CCDC88C-209ENST00000554872 ACADVLP49748 655 aa16.18■□□□□ 0.18
CCDC88C-209ENST00000554872 HNRNPKP61978 463 aaKnown RBP eCLIP16.18■□□□□ 0.18
CCDC88C-209ENST00000554872 POLR2LP62875 67 aaKnown RBP16.18■□□□□ 0.18
CCDC88C-209ENST00000554872 BCL2L1Q07817 233 aa16.18■□□□□ 0.18
CCDC88C-209ENST00000554872 SLC10A7Q0GE19 358 aa16.18■□□□□ 0.18
CCDC88C-209ENST00000554872 ZNF211Q13398 564 aaPredicted RBP16.18■□□□□ 0.18
CCDC88C-209ENST00000554872 KRT81Q14533 505 aa16.18■□□□□ 0.18
CCDC88C-209ENST00000554872 ST3GAL2Q16842 350 aa16.18■□□□□ 0.18
CCDC88C-209ENST00000554872 PROX2Q3B8N5 592 aa16.18■□□□□ 0.18
CCDC88C-209ENST00000554872 CFAP58Q5T655 872 aa16.18■□□□□ 0.18
CCDC88C-209ENST00000554872 ERAP2Q6P179 960 aa16.18■□□□□ 0.18
CCDC88C-209ENST00000554872 ZSWIM9Q86XI8 627 aa16.18■□□□□ 0.18
CCDC88C-209ENST00000554872 CAMK1DQ8IU85 385 aa16.18■□□□□ 0.18
CCDC88C-209ENST00000554872 MAP7D3Q8IWC1 876 aa16.18■□□□□ 0.18
CCDC88C-209ENST00000554872 TP53INP2Q8IXH6 220 aa16.18■□□□□ 0.18
CCDC88C-209ENST00000554872 RHOT2Q8IXI1 618 aa16.18■□□□□ 0.18
CCDC88C-209ENST00000554872 SLC25A45Q8N413 288 aa16.18■□□□□ 0.18
CCDC88C-209ENST00000554872 ATPAF2Q8N5M1 289 aa16.18■□□□□ 0.18
CCDC88C-209ENST00000554872 TEX26Q8N6G2 289 aa16.18■□□□□ 0.18
CCDC88C-209ENST00000554872 TP53I13Q8NBR0 393 aaPredicted RBP16.18■□□□□ 0.18
CCDC88C-209ENST00000554872 OR4C6Q8NH72 309 aa16.18■□□□□ 0.18
CCDC88C-209ENST00000554872 CNDP2Q96KP4 475 aaKnown RBP16.18■□□□□ 0.18
CCDC88C-209ENST00000554872 CCDC42Q96M95 316 aa16.18■□□□□ 0.18
CCDC88C-209ENST00000554872 CHP1Q99653 195 aa16.18■□□□□ 0.18
CCDC88C-209ENST00000554872 NHEJ1Q9H9Q4 299 aaPredicted RBP16.18■□□□□ 0.18
CCDC88C-209ENST00000554872 AMACRQ9UHK6 382 aa16.18■□□□□ 0.18
CCDC88C-209ENST00000554872 CSNK1G3Q9Y6M4 447 aa16.18■□□□□ 0.18
CCDC88C-209ENST00000554872 PTPRBP23467 1997 aa16.17■□□□□ 0.18
CCDC88C-209ENST00000554872 C1QTNF9BB2RNN3 333 aa16.17■□□□□ 0.18
CCDC88C-209ENST00000554872 AKR1B15C9JRZ8 316 aaPredicted RBP16.17■□□□□ 0.18
CCDC88C-209ENST00000554872 ZZEF1O43149 2961 aa16.17■□□□□ 0.18
CCDC88C-209ENST00000554872 C1QTNF9P0C862 333 aa16.17■□□□□ 0.18
CCDC88C-209ENST00000554872 ACP1P24666 158 aa16.17■□□□□ 0.18
CCDC88C-209ENST00000554872 IGFALSP35858 605 aa16.17■□□□□ 0.18
CCDC88C-209ENST00000554872 PEX5P50542 639 aa16.17■□□□□ 0.18
CCDC88C-209ENST00000554872 GALNT2Q10471 571 aa16.17■□□□□ 0.18
CCDC88C-209ENST00000554872 PTK2BQ14289 1009 aa16.17■□□□□ 0.18
CCDC88C-209ENST00000554872 ZNF235Q14590 738 aa16.17■□□□□ 0.18
CCDC88C-209ENST00000554872 NCBP2-AS2Q69YL0 99 aa16.17■□□□□ 0.18
CCDC88C-209ENST00000554872 ALG1LQ6GMV1 187 aa16.17■□□□□ 0.18
CCDC88C-209ENST00000554872 BBS5Q8N3I7 341 aa16.17■□□□□ 0.18
CCDC88C-209ENST00000554872 EID2Q8N6I1 236 aa16.17■□□□□ 0.18
CCDC88C-209ENST00000554872 PNPLA1Q8N8W4 532 aa16.17■□□□□ 0.18
CCDC88C-209ENST00000554872 FAM181AQ8N9Y4 354 aa16.17■□□□□ 0.18
CCDC88C-209ENST00000554872 RFFLQ8WZ73 363 aa16.17■□□□□ 0.18
CCDC88C-209ENST00000554872 TSGA13Q96PP4 275 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms