RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 ZNF839A8K0R7 811 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 IPO13O94829 963 aaKnown RBP17.68■□□□□ 0.42
SYNE3-202ENST00000553340 ARSAP15289 507 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 WARSP23381 471 aaKnown RBP17.68■□□□□ 0.42
SYNE3-202ENST00000553340 LRPAP1P30533 357 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 ZNF135P52742 658 aaPredicted RBP17.68■□□□□ 0.42
SYNE3-202ENST00000553340 GJA9P57773 515 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 PRAMEP78395 509 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 KCTD21Q4G0X4 260 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 OR2T34Q8NGX1 318 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 OR2T3Q8NH03 318 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 DPF3Q92784 378 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 HSPBAP1Q96EW2 488 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 CELF6Q96J87 481 aaKnown RBP17.68■□□□□ 0.42
SYNE3-202ENST00000553340 RANBP9Q96S59 729 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 PLGRKTQ9HBL7 147 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 GOLGA2P5Q9HBQ8 144 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 ARMC1Q9NVT9 282 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 NRCAMQ92823 1304 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 A0A0G2JLL6 359 aaPredicted RBP17.68■□□□□ 0.42
SYNE3-202ENST00000553340 SOCS2O14508 198 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 CACNG3O60359 315 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 PAMP19021 973 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 ARNTP27540 789 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 SLC7A2P52569 658 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 DAOAP59103 153 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 ZNF470Q6ECI4 717 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 FAM43BQ6ZT52 329 aaPredicted RBP17.68■□□□□ 0.42
SYNE3-202ENST00000553340 ERMP1Q7Z2K6 904 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 PRRT2Q7Z6L0 340 aaPredicted RBP17.68■□□□□ 0.42
SYNE3-202ENST00000553340 TRIM74Q86UV6 250 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 TRIM73Q86UV7 250 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 KLHDC8BQ8IXV7 354 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 LRRC43Q8N309 656 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 BBS5Q8N3I7 341 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 IPMKQ8NFU5 416 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 CANT1Q8WVQ1 401 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 COLEC11Q9BWP8 271 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 OSBPL6Q9BZF3 934 aa17.68■□□□□ 0.42
SYNE3-202ENST00000553340 ZSCAN9O15535 394 aaPredicted RBP17.67■□□□□ 0.42
SYNE3-202ENST00000553340 ANXA9O76027 345 aa17.67■□□□□ 0.42
SYNE3-202ENST00000553340 HNRNPCP07910 306 aaKnown RBP eCLIP17.67■□□□□ 0.42
SYNE3-202ENST00000553340 GRIA3P42263 894 aa17.67■□□□□ 0.42
SYNE3-202ENST00000553340 TECRLQ5HYJ1 363 aa17.67■□□□□ 0.42
SYNE3-202ENST00000553340 C8orf82Q6P1X6 216 aaPredicted RBP17.67■□□□□ 0.42
SYNE3-202ENST00000553340 ZNF554Q86TJ5 538 aa17.67■□□□□ 0.42
SYNE3-202ENST00000553340 ERO1BQ86YB8 467 aa17.67■□□□□ 0.42
SYNE3-202ENST00000553340 CLVS1Q8IUQ0 354 aaPredicted RBP17.67■□□□□ 0.42
SYNE3-202ENST00000553340 TOP6BLQ8N6T0 577 aa17.67■□□□□ 0.42
SYNE3-202ENST00000553340 C2CD4AQ8NCU7 369 aaPredicted RBP17.67■□□□□ 0.42
SYNE3-202ENST00000553340 PGAP3Q96FM1 320 aaPredicted RBP17.67■□□□□ 0.42
SYNE3-202ENST00000553340 ADAMTS10Q9H324 1103 aa17.67■□□□□ 0.42
SYNE3-202ENST00000553340 WDCPQ9H6R7 721 aa17.67■□□□□ 0.42
SYNE3-202ENST00000553340 IGSF5Q9NSI5 407 aa17.67■□□□□ 0.42
SYNE3-202ENST00000553340 CAMSAP3Q9P1Y5 1249 aaPredicted RBP17.67■□□□□ 0.42
SYNE3-202ENST00000553340 PTBP2Q9UKA9 531 aaKnown RBP17.67■□□□□ 0.42
SYNE3-202ENST00000553340 SNX10Q9Y5X0 201 aa17.67■□□□□ 0.42
SYNE3-202ENST00000553340 A8MT66 165 aa17.67■□□□□ 0.42
SYNE3-202ENST00000553340 LRIG2O94898 1065 aa17.67■□□□□ 0.42
SYNE3-202ENST00000553340 MT-CYBP00156 380 aaPredicted RBP17.67■□□□□ 0.42
SYNE3-202ENST00000553340 F9P00740 461 aa17.67■□□□□ 0.42
SYNE3-202ENST00000553340 CPB1P15086 417 aa17.67■□□□□ 0.42
SYNE3-202ENST00000553340 LILRA4P59901 499 aa17.67■□□□□ 0.42
SYNE3-202ENST00000553340 PFKPQ01813 784 aa17.67■□□□□ 0.42
SYNE3-202ENST00000553340 ZBED5Q49AG3 693 aa17.67■□□□□ 0.42
SYNE3-202ENST00000553340 ACBD5Q5T8D3 534 aaPredicted RBP17.67■□□□□ 0.42
SYNE3-202ENST00000553340 AGAP9Q5VTM2 703 aa17.67■□□□□ 0.42
SYNE3-202ENST00000553340 TTC33Q6PID6 262 aaPredicted RBP17.67■□□□□ 0.42
SYNE3-202ENST00000553340 CAMK1DQ8IU85 385 aa17.67■□□□□ 0.42
SYNE3-202ENST00000553340 RNF135Q8IUD6 432 aa17.67■□□□□ 0.42
SYNE3-202ENST00000553340 PACRGLQ8N7B6 248 aa17.67■□□□□ 0.42
SYNE3-202ENST00000553340 PTCD2Q8WV60 388 aaKnown RBP17.67■□□□□ 0.42
SYNE3-202ENST00000553340 TSGA13Q96PP4 275 aa17.67■□□□□ 0.42
SYNE3-202ENST00000553340 CAMKK2Q96RR4 588 aa17.67■□□□□ 0.42
SYNE3-202ENST00000553340 FAM49AQ9H0Q0 323 aaPredicted RBP17.67■□□□□ 0.42
SYNE3-202ENST00000553340 MROH8Q9H579 483 aa17.67■□□□□ 0.42
SYNE3-202ENST00000553340 TNFRSF12AQ9NP84 129 aa17.67■□□□□ 0.42
SYNE3-202ENST00000553340 FBXO5Q9UKT4 447 aa17.67■□□□□ 0.42
SYNE3-202ENST00000553340 MTF2Q9Y483 593 aaPredicted RBP17.67■□□□□ 0.42
SYNE3-202ENST00000553340 TCAF1Q9Y4C2 921 aa17.67■□□□□ 0.42
SYNE3-202ENST00000553340 ZNF701M0R085 212 aaPredicted RBP17.66■□□□□ 0.42
SYNE3-202ENST00000553340 MAGEB3O15480 346 aa17.66■□□□□ 0.42
SYNE3-202ENST00000553340 KCNA5P22460 613 aa17.66■□□□□ 0.42
SYNE3-202ENST00000553340 STT3AP46977 705 aa17.66■□□□□ 0.42
SYNE3-202ENST00000553340 ACADVLP49748 655 aa17.66■□□□□ 0.42
SYNE3-202ENST00000553340 PLOD1Q02809 727 aaPredicted RBP17.66■□□□□ 0.42
SYNE3-202ENST00000553340 ZNF33AQ06730 810 aa17.66■□□□□ 0.42
SYNE3-202ENST00000553340 TAPT1Q6NXT6 567 aa17.66■□□□□ 0.42
SYNE3-202ENST00000553340 DUS1LQ6P1R4 473 aaKnown RBP17.66■□□□□ 0.42
SYNE3-202ENST00000553340 SULF1Q8IWU6 871 aa17.66■□□□□ 0.42
SYNE3-202ENST00000553340 ZNF786Q8N393 782 aa17.66■□□□□ 0.42
SYNE3-202ENST00000553340 MFSD2AQ8NA29 543 aa17.66■□□□□ 0.42
SYNE3-202ENST00000553340 PCYOX1LQ8NBM8 494 aa17.66■□□□□ 0.42
SYNE3-202ENST00000553340 TNIP2Q8NFZ5 429 aa17.66■□□□□ 0.42
SYNE3-202ENST00000553340 ROPN1LQ96C74 230 aa17.66■□□□□ 0.42
SYNE3-202ENST00000553340 OTUD5Q96G74 571 aa17.66■□□□□ 0.42
SYNE3-202ENST00000553340 FICDQ9BVA6 458 aa17.66■□□□□ 0.42
SYNE3-202ENST00000553340 TKTL2Q9H0I9 626 aa17.66■□□□□ 0.42
SYNE3-202ENST00000553340 SLC2A6Q9UGQ3 507 aa17.66■□□□□ 0.42
SYNE3-202ENST00000553340 ZNF510Q9Y2H8 683 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms