RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 SEL1L3Q68CR1 1132 aa14.25□□□□□ -0.13
PTCH1-226ENST00000553011 BZW1Q7L1Q6 419 aaKnown RBP14.25□□□□□ -0.13
PTCH1-226ENST00000553011 TTC7BQ86TV6 843 aa14.25□□□□□ -0.13
PTCH1-226ENST00000553011 TRIM69Q86WT6 500 aa14.25□□□□□ -0.13
PTCH1-226ENST00000553011 HORMAD1Q86X24 394 aa14.25□□□□□ -0.13
PTCH1-226ENST00000553011 REXO1L1PQ8IX06 675 aa14.25□□□□□ -0.13
PTCH1-226ENST00000553011 CNTD1Q8N815 330 aa14.25□□□□□ -0.13
PTCH1-226ENST00000553011 ACTL9Q8TC94 416 aa14.25□□□□□ -0.13
PTCH1-226ENST00000553011 RAB7BQ96AH8 199 aa14.25□□□□□ -0.13
PTCH1-226ENST00000553011 ALS2CR12Q96Q35 445 aa14.25□□□□□ -0.13
PTCH1-226ENST00000553011 FAM118BQ9BPY3 351 aa14.25□□□□□ -0.13
PTCH1-226ENST00000553011 POLR1EQ9GZS1 481 aaKnown RBP14.25□□□□□ -0.13
PTCH1-226ENST00000553011 BRD8Q9H0E9 1235 aa14.25□□□□□ -0.13
PTCH1-226ENST00000553011 RXFP3Q9NSD7 469 aa14.25□□□□□ -0.13
PTCH1-226ENST00000553011 SUSD2Q9UGT4 822 aa14.25□□□□□ -0.13
PTCH1-226ENST00000553011 ZFR2Q9UPR6 939 aaKnown RBP14.25□□□□□ -0.13
PTCH1-226ENST00000553011 PCDHGC4Q9Y5F7 938 aa14.25□□□□□ -0.13
PTCH1-226ENST00000553011 SPTBN2O15020 2390 aa14.24□□□□□ -0.13
PTCH1-226ENST00000553011 A0A1B0GTW7 788 aa14.24□□□□□ -0.13
PTCH1-226ENST00000553011 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP14.24□□□□□ -0.13
PTCH1-226ENST00000553011 UPK3BL1B0FP48 263 aa14.24□□□□□ -0.13
PTCH1-226ENST00000553011 UPK3BL2E5RIL1 263 aa14.24□□□□□ -0.13
PTCH1-226ENST00000553011 NEMP1O14524 444 aa14.24□□□□□ -0.13
PTCH1-226ENST00000553011 TRAFD1O14545 582 aaPredicted RBP14.24□□□□□ -0.13
PTCH1-226ENST00000553011 WNT9AO14904 365 aa14.24□□□□□ -0.13
PTCH1-226ENST00000553011 AREL1O15033 823 aa14.24□□□□□ -0.13
PTCH1-226ENST00000553011 BCAT2O15382 392 aaPredicted RBP14.24□□□□□ -0.13
PTCH1-226ENST00000553011 AP1G1O43747 822 aa14.24□□□□□ -0.13
PTCH1-226ENST00000553011 GNSP15586 552 aa14.24□□□□□ -0.13
PTCH1-226ENST00000553011 PRLRP16471 622 aa14.24□□□□□ -0.13
PTCH1-226ENST00000553011 KCNA4P22459 653 aa14.24□□□□□ -0.13
PTCH1-226ENST00000553011 XPAP23025 273 aaPredicted RBP14.24□□□□□ -0.13
PTCH1-226ENST00000553011 OTUD4Q01804 1114 aaKnown RBP14.24□□□□□ -0.13
PTCH1-226ENST00000553011 SEMG2Q02383 582 aa14.24□□□□□ -0.13
PTCH1-226ENST00000553011 NIPAL4Q0D2K0 466 aa14.24□□□□□ -0.13
PTCH1-226ENST00000553011 NOMO1Q15155 1222 aa14.24□□□□□ -0.13
PTCH1-226ENST00000553011 RPS6KA1Q15418 735 aa14.24□□□□□ -0.13
PTCH1-226ENST00000553011 UGP2Q16851 508 aa14.24□□□□□ -0.13
PTCH1-226ENST00000553011 ZNF284Q2VY69 593 aa14.24□□□□□ -0.13
PTCH1-226ENST00000553011 CFAP58Q5T655 872 aa14.24□□□□□ -0.13
PTCH1-226ENST00000553011 ALG1LQ6GMV1 187 aa14.24□□□□□ -0.13
PTCH1-226ENST00000553011 NEK5Q6P3R8 708 aa14.24□□□□□ -0.13
PTCH1-226ENST00000553011 SLC23A3Q6PIS1 610 aa14.24□□□□□ -0.13
PTCH1-226ENST00000553011 BRAT1Q6PJG6 821 aa14.24□□□□□ -0.13
PTCH1-226ENST00000553011 LAYNQ6UX15 382 aa14.24□□□□□ -0.13
PTCH1-226ENST00000553011 PRPF39Q86UA1 669 aaKnown RBP14.24□□□□□ -0.13
PTCH1-226ENST00000553011 GPR161Q8N6U8 529 aaKnown RBP14.24□□□□□ -0.13
PTCH1-226ENST00000553011 PAF1Q8N7H5 531 aa14.24□□□□□ -0.13
PTCH1-226ENST00000553011 C12orf50Q8NA57 414 aaPredicted RBP14.24□□□□□ -0.13
PTCH1-226ENST00000553011 CEP76Q8TAP6 659 aa14.24□□□□□ -0.13
PTCH1-226ENST00000553011 ARRDC2Q8TBH0 407 aa14.24□□□□□ -0.13
PTCH1-226ENST00000553011 HCAR2Q8TDS4 363 aa14.24□□□□□ -0.13
PTCH1-226ENST00000553011 PDCD6IPQ8WUM4 868 aaKnown RBP14.24□□□□□ -0.13
PTCH1-226ENST00000553011 TFB1MQ8WVM0 346 aaKnown RBP14.24□□□□□ -0.13
PTCH1-226ENST00000553011 ECHDC3Q96DC8 303 aa14.24□□□□□ -0.13
PTCH1-226ENST00000553011 SLC6A18Q96N87 628 aa14.24□□□□□ -0.13
PTCH1-226ENST00000553011 QKIQ96PU8 341 aaKnown RBP eCLIP14.24□□□□□ -0.13
PTCH1-226ENST00000553011 C10orf88Q9H8K7 445 aa14.24□□□□□ -0.13
PTCH1-226ENST00000553011 CAPN10Q9HC96 672 aa14.24□□□□□ -0.13
PTCH1-226ENST00000553011 TM9SF3Q9HD45 589 aa14.24□□□□□ -0.13
PTCH1-226ENST00000553011 PCDH12Q9NPG4 1184 aa14.24□□□□□ -0.13
PTCH1-226ENST00000553011 AMACRQ9UHK6 382 aa14.24□□□□□ -0.13
PTCH1-226ENST00000553011 ATP8A1Q9Y2Q0 1164 aa14.24□□□□□ -0.13
PTCH1-226ENST00000553011 DMXL1Q9Y485 3027 aa14.24□□□□□ -0.13
PTCH1-226ENST00000553011 LNP1A1A4G5 178 aa14.23□□□□□ -0.13
PTCH1-226ENST00000553011 SLC31A1O15431 190 aa14.23□□□□□ -0.13
PTCH1-226ENST00000553011 HTRA2O43464 458 aaPredicted RBP14.23□□□□□ -0.13
PTCH1-226ENST00000553011 GDF9O60383 454 aa14.23□□□□□ -0.13
PTCH1-226ENST00000553011 TJP3O95049 919 aa14.23□□□□□ -0.13
PTCH1-226ENST00000553011 SERPINF2P08697 491 aa14.23□□□□□ -0.13
PTCH1-226ENST00000553011 PTPN3P26045 913 aa14.23□□□□□ -0.13
PTCH1-226ENST00000553011 CSNK1EP49674 416 aaKnown RBP14.23□□□□□ -0.13
PTCH1-226ENST00000553011 AASDHQ4L235 1098 aaPredicted RBP14.23□□□□□ -0.13
PTCH1-226ENST00000553011 TMEM259Q4ZIN3 620 aa14.23□□□□□ -0.13
PTCH1-226ENST00000553011 RALGPS1Q5JS13 557 aa14.23□□□□□ -0.13
PTCH1-226ENST00000553011 RABEPKQ7Z6M1 372 aa14.23□□□□□ -0.13
PTCH1-226ENST00000553011 TRIM58Q8NG06 486 aa14.23□□□□□ -0.13
PTCH1-226ENST00000553011 FEM1CQ96JP0 617 aa14.23□□□□□ -0.13
PTCH1-226ENST00000553011 AGAP3Q96P47 875 aa14.23□□□□□ -0.13
PTCH1-226ENST00000553011 MYOCQ99972 504 aa14.23□□□□□ -0.13
PTCH1-226ENST00000553011 NUSAP1Q9BXS6 441 aaKnown RBP14.23□□□□□ -0.13
PTCH1-226ENST00000553011 TRMT1Q9NXH9 659 aaKnown RBP14.23□□□□□ -0.13
PTCH1-226ENST00000553011 SLC6A14Q9UN76 642 aa14.23□□□□□ -0.13
PTCH1-226ENST00000553011 CA5BQ9Y2D0 317 aa14.23□□□□□ -0.13
PTCH1-226ENST00000553011 A0A1B0GVT2 93 aa14.22□□□□□ -0.13
PTCH1-226ENST00000553011 TCRBV7S2A1N4TA0A589 114 aa14.22□□□□□ -0.13
PTCH1-226ENST00000553011 IGLON5A6NGN9 336 aa14.22□□□□□ -0.13
PTCH1-226ENST00000553011 HACD1B0YJ81 288 aa14.22□□□□□ -0.13
PTCH1-226ENST00000553011 H7C0C1 242 aa14.22□□□□□ -0.13
PTCH1-226ENST00000553011 RIOK3O14730 519 aaKnown RBP14.22□□□□□ -0.13
PTCH1-226ENST00000553011 ZSCAN12O43309 604 aa14.22□□□□□ -0.13
PTCH1-226ENST00000553011 TSPAN6O43657 245 aa14.22□□□□□ -0.13
PTCH1-226ENST00000553011 SOCS5O75159 536 aa14.22□□□□□ -0.13
PTCH1-226ENST00000553011 ENGP17813 658 aa14.22□□□□□ -0.13
PTCH1-226ENST00000553011 ATP5OP48047 213 aa14.22□□□□□ -0.13
PTCH1-226ENST00000553011 RPS21P63220 83 aaKnown RBP14.22□□□□□ -0.13
PTCH1-226ENST00000553011 BNC1Q01954 994 aa14.22□□□□□ -0.13
PTCH1-226ENST00000553011 CCDC173Q0VFZ6 552 aa14.22□□□□□ -0.13
PTCH1-226ENST00000553011 WASHC5Q12768 1159 aa14.22□□□□□ -0.13
PTCH1-226ENST00000553011 FGL2Q14314 439 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms