RNA–Protein interactions for RNA: ENST00000550857.5

PTPRB-209, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPRB, Length 5,839 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-209ENST00000550857 STRCP1A6NGW2 1772 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 SLC28A1O00337 649 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 TLX3O43711 291 aaPredicted RBP8.11□□□□□ -1.11
PTPRB-209ENST00000550857 CILPO75339 1184 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 DLDP09622 509 aaKnown RBP8.11□□□□□ -1.11
PTPRB-209ENST00000550857 ADRA1BP35368 520 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 CDK7P50613 346 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 SMIM11AP58511 58 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 LRRC8BQ6P9F7 803 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 C16orf89Q6UX73 402 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 SPATA20Q8TB22 786 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 DQX1Q8TE96 717 aaKnown RBP8.11□□□□□ -1.11
PTPRB-209ENST00000550857 CDC6Q99741 560 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 SRMSQ9H3Y6 488 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 WHRNQ9P202 907 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 RGS17Q9UGC6 210 aaPredicted RBP8.11□□□□□ -1.11
PTPRB-209ENST00000550857 IL36AQ9UHA7 158 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 DMTF1Q9Y222 760 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 ADGRG1Q9Y653 693 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 KCNU1A8MYU2 1149 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 WNT9AO14904 365 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 SUPT7LO94864 414 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 KRT75O95678 551 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 TAL1P17542 331 aaPredicted RBP8.11□□□□□ -1.11
PTPRB-209ENST00000550857 WASP42768 502 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 PLEKHG6Q3KR16 790 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 TMEM31Q5JXX7 168 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 NEPROQ6NW34 567 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 EPB41L1Q9H4G0 881 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 ALG13Q9NP73 1137 aaKnown RBP8.11□□□□□ -1.11
PTPRB-209ENST00000550857 TRPS1Q9UHF7 1281 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 SCML2Q9UQR0 700 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 SEC23IPQ9Y6Y8 1000 aaKnown RBP8.11□□□□□ -1.11
PTPRB-209ENST00000550857 GLYATL1P3A0A0U1RQE8 302 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 WWP2O00308 870 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 FYNP06241 537 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 CNR2P34972 360 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 CLCN1P35523 988 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 COILP38432 576 aaPredicted RBP8.11□□□□□ -1.11
PTPRB-209ENST00000550857 MAGEA4P43358 317 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 CSTF3Q12996 717 aaKnown RBP8.11□□□□□ -1.11
PTPRB-209ENST00000550857 GPSM1Q86YR5 675 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 KATNAL2Q8IYT4 538 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 TMCO5AQ8N6Q1 288 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 PLEKHG4BQ96PX9 1271 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 PHF7Q9BWX1 381 aaPredicted RBP8.11□□□□□ -1.11
PTPRB-209ENST00000550857 TXNRD2Q9NNW7 524 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 RBM12Q9NTZ6 932 aaKnown RBP8.11□□□□□ -1.11
PTPRB-209ENST00000550857 GDAP2Q9NXN4 497 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 B4GALT7Q9UBV7 327 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 BLOC1S6Q9UL45 172 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 PCDHGC3Q9UN70 934 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 TRDMT1O14717 391 aaKnown RBP8.11□□□□□ -1.11
PTPRB-209ENST00000550857 PRMT5O14744 637 aaPredicted RBP8.11□□□□□ -1.11
PTPRB-209ENST00000550857 B4GALT5O43286 388 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 PDE9AO76083 593 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 KLF8O95600 359 aaPredicted RBP8.11□□□□□ -1.11
PTPRB-209ENST00000550857 CENPAP49450 140 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 CASP4P49662 377 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 NRG3P56975 720 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 RPS21P63220 83 aaKnown RBP8.11□□□□□ -1.11
PTPRB-209ENST00000550857 KHDRBS1Q07666 443 aaKnown RBP eCLIP8.11□□□□□ -1.11
PTPRB-209ENST00000550857 ITGADQ13349 1161 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 SNAP47Q5SQN1 464 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 KRT80Q6KB66 452 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 CAND1Q86VP6 1230 aaKnown RBP8.11□□□□□ -1.11
PTPRB-209ENST00000550857 GPR152Q8TDT2 470 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 CRELD1Q96HD1 420 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 PELOQ9BRX2 385 aaKnown RBP8.11□□□□□ -1.11
PTPRB-209ENST00000550857 ITM2CQ9NQX7 267 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 TMEM216Q9P0N5 145 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 SLC24A2Q9UI40 661 aa8.11□□□□□ -1.11
PTPRB-209ENST00000550857 C11orf97A0A1B0GVM6 126 aaPredicted RBP8.1□□□□□ -1.11
PTPRB-209ENST00000550857 RRP9O43818 475 aaKnown RBP8.1□□□□□ -1.11
PTPRB-209ENST00000550857 FKBP9O95302 570 aa8.1□□□□□ -1.11
PTPRB-209ENST00000550857 ITGBL1O95965 494 aaPredicted RBP8.1□□□□□ -1.11
PTPRB-209ENST00000550857 EIF2S1P05198 315 aaKnown RBP8.1□□□□□ -1.11
PTPRB-209ENST00000550857 GLULP15104 373 aa8.1□□□□□ -1.11
PTPRB-209ENST00000550857 CCNCP24863 283 aa8.1□□□□□ -1.11
PTPRB-209ENST00000550857 ACTR1BP42025 376 aa8.1□□□□□ -1.11
PTPRB-209ENST00000550857 MAGEA10P43363 369 aaPredicted RBP8.1□□□□□ -1.11
PTPRB-209ENST00000550857 ACTR1AP61163 376 aa8.1□□□□□ -1.11
PTPRB-209ENST00000550857 WDR5P61964 334 aaKnown RBP8.1□□□□□ -1.11
PTPRB-209ENST00000550857 GNGT1P63211 74 aa8.1□□□□□ -1.11
PTPRB-209ENST00000550857 MRPS15P82914 257 aaKnown RBP8.1□□□□□ -1.11
PTPRB-209ENST00000550857 CREB5Q02930 508 aa8.1□□□□□ -1.11
PTPRB-209ENST00000550857 CACNG1Q06432 222 aa8.1□□□□□ -1.11
PTPRB-209ENST00000550857 CYLC2Q14093 348 aaPredicted RBP8.1□□□□□ -1.11
PTPRB-209ENST00000550857 CCDC153Q494R4 210 aa8.1□□□□□ -1.11
PTPRB-209ENST00000550857 NT5DC1Q5TFE4 455 aa8.1□□□□□ -1.11
PTPRB-209ENST00000550857 FKBP9P1Q75LS8 142 aa8.1□□□□□ -1.11
PTPRB-209ENST00000550857 SIDT2Q8NBJ9 832 aaKnown RBP8.1□□□□□ -1.11
PTPRB-209ENST00000550857 MIPOL1Q8TD10 442 aa8.1□□□□□ -1.11
PTPRB-209ENST00000550857 DIS3LQ8TF46 1054 aaKnown RBP8.1□□□□□ -1.11
PTPRB-209ENST00000550857 DACT3Q96B18 629 aaPredicted RBP8.1□□□□□ -1.11
PTPRB-209ENST00000550857 NUS1Q96E22 293 aa8.1□□□□□ -1.11
PTPRB-209ENST00000550857 VMP1Q96GC9 406 aa8.1□□□□□ -1.11
PTPRB-209ENST00000550857 CEP44Q9C0F1 390 aa8.1□□□□□ -1.11
PTPRB-209ENST00000550857 MCCC2Q9HCC0 563 aa8.1□□□□□ -1.11
PTPRB-209ENST00000550857 SUFUQ9UMX1 484 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms