RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 AFMIDQ63HM1 303 aa16.49■□□□□ 0.23
VPS29-207ENST00000549970 C19orf48Q6RUI8 117 aa16.49■□□□□ 0.23
VPS29-207ENST00000549970 CAMK1DQ8IU85 385 aa16.49■□□□□ 0.23
VPS29-207ENST00000549970 TP53INP2Q8IXH6 220 aa16.49■□□□□ 0.23
VPS29-207ENST00000549970 TP53I13Q8NBR0 393 aaPredicted RBP16.49■□□□□ 0.23
VPS29-207ENST00000549970 HSPH1Q92598 858 aa16.49■□□□□ 0.23
VPS29-207ENST00000549970 DUSP23Q9BVJ7 150 aa16.49■□□□□ 0.23
VPS29-207ENST00000549970 CINPQ9BW66 212 aaPredicted RBP16.49■□□□□ 0.23
VPS29-207ENST00000549970 THAP2Q9H0W7 228 aa16.49■□□□□ 0.23
VPS29-207ENST00000549970 PCDH12Q9NPG4 1184 aa16.49■□□□□ 0.23
VPS29-207ENST00000549970 MBNL1Q9NR56 388 aaKnown RBP16.49■□□□□ 0.23
VPS29-207ENST00000549970 BZW2Q9Y6E2 419 aaKnown RBP16.49■□□□□ 0.23
VPS29-207ENST00000549970 ANKRD36A6QL64 1941 aa16.49■□□□□ 0.23
VPS29-207ENST00000549970 LRRK1Q38SD2 2015 aa16.48■□□□□ 0.23
VPS29-207ENST00000549970 URB1O60287 2271 aaKnown RBP16.48■□□□□ 0.23
VPS29-207ENST00000549970 TSPAN11A1L157 253 aa16.48■□□□□ 0.23
VPS29-207ENST00000549970 H3BRJ5 948 aa16.48■□□□□ 0.23
VPS29-207ENST00000549970 AQP9O43315 295 aa16.48■□□□□ 0.23
VPS29-207ENST00000549970 SERPING1P05155 500 aa16.48■□□□□ 0.23
VPS29-207ENST00000549970 CKMT1AP12532 417 aa16.48■□□□□ 0.23
VPS29-207ENST00000549970 ARL4AP40617 200 aa16.48■□□□□ 0.23
VPS29-207ENST00000549970 SUOXP51687 545 aa16.48■□□□□ 0.23
VPS29-207ENST00000549970 ZNF135P52742 658 aaPredicted RBP16.48■□□□□ 0.23
VPS29-207ENST00000549970 SEMG2Q02383 582 aa16.48■□□□□ 0.23
VPS29-207ENST00000549970 EIF2B5Q13144 721 aaKnown RBP16.48■□□□□ 0.23
VPS29-207ENST00000549970 PTK2BQ14289 1009 aa16.48■□□□□ 0.23
VPS29-207ENST00000549970 IRF4Q15306 451 aa16.48■□□□□ 0.23
VPS29-207ENST00000549970 NFKBIBQ15653 356 aa16.48■□□□□ 0.23
VPS29-207ENST00000549970 TMEM52BQ4KMG9 183 aa16.48■□□□□ 0.23
VPS29-207ENST00000549970 ERAP2Q6P179 960 aa16.48■□□□□ 0.23
VPS29-207ENST00000549970 BRAT1Q6PJG6 821 aa16.48■□□□□ 0.23
VPS29-207ENST00000549970 SRLQ86TD4 932 aa16.48■□□□□ 0.23
VPS29-207ENST00000549970 ZSWIM9Q86XI8 627 aa16.48■□□□□ 0.23
VPS29-207ENST00000549970 RBFAQ8N0V3 343 aa16.48■□□□□ 0.23
VPS29-207ENST00000549970 PAF1Q8N7H5 531 aa16.48■□□□□ 0.23
VPS29-207ENST00000549970 HCAR2Q8TDS4 363 aa16.48■□□□□ 0.23
VPS29-207ENST00000549970 LMX1AQ8TE12 382 aa16.48■□□□□ 0.23
VPS29-207ENST00000549970 SYN2Q92777 582 aaPredicted RBP16.48■□□□□ 0.23
VPS29-207ENST00000549970 NXPE2Q96DL1 559 aa16.48■□□□□ 0.23
VPS29-207ENST00000549970 BTBD6Q96KE9 485 aa16.48■□□□□ 0.23
VPS29-207ENST00000549970 ZNF641Q96N77 438 aaPredicted RBP16.48■□□□□ 0.23
VPS29-207ENST00000549970 TUBGCP5Q96RT8 1024 aa16.48■□□□□ 0.23
VPS29-207ENST00000549970 ATP13A3Q9H7F0 1226 aa16.48■□□□□ 0.23
VPS29-207ENST00000549970 LHX6Q9UPM6 363 aa16.48■□□□□ 0.23
VPS29-207ENST00000549970 CLCA2Q9UQC9 943 aa16.48■□□□□ 0.23
VPS29-207ENST00000549970 GPSM3Q9Y4H4 160 aa16.48■□□□□ 0.23
VPS29-207ENST00000549970 C6P13671 934 aa16.47■□□□□ 0.23
VPS29-207ENST00000549970 AMPD1P23109 780 aa16.47■□□□□ 0.23
VPS29-207ENST00000549970 SERPINA4P29622 427 aa16.47■□□□□ 0.23
VPS29-207ENST00000549970 HCAR3P49019 387 aa16.47■□□□□ 0.23
VPS29-207ENST00000549970 ZBED6P86452 979 aa16.47■□□□□ 0.23
VPS29-207ENST00000549970 E2F1Q01094 437 aa16.47■□□□□ 0.23
VPS29-207ENST00000549970 IL10RBQ08334 325 aa16.47■□□□□ 0.23
VPS29-207ENST00000549970 PIGHQ14442 188 aaPredicted RBP16.47■□□□□ 0.23
VPS29-207ENST00000549970 ACAP1Q15027 740 aa16.47■□□□□ 0.23
VPS29-207ENST00000549970 DPYSL2Q16555 572 aa16.47■□□□□ 0.23
VPS29-207ENST00000549970 DEFB133Q30KQ1 61 aa16.47■□□□□ 0.23
VPS29-207ENST00000549970 BOLA3Q53S33 107 aa16.47■□□□□ 0.23
VPS29-207ENST00000549970 LZTR1Q8N653 840 aa16.47■□□□□ 0.23
VPS29-207ENST00000549970 RFFLQ8WZ73 363 aa16.47■□□□□ 0.23
VPS29-207ENST00000549970 NUP85Q9BW27 656 aa16.47■□□□□ 0.23
VPS29-207ENST00000549970 TCEAL2Q9H3H9 227 aaPredicted RBP16.47■□□□□ 0.23
VPS29-207ENST00000549970 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.47■□□□□ 0.23
VPS29-207ENST00000549970 ETNK2Q9NVF9 386 aa16.47■□□□□ 0.23
VPS29-207ENST00000549970 IFNKQ9P0W0 207 aa16.47■□□□□ 0.23
VPS29-207ENST00000549970 APOBEC3BQ9UH17 382 aaKnown RBP16.47■□□□□ 0.23
VPS29-207ENST00000549970 ANAPC7Q9UJX3 599 aa16.47■□□□□ 0.23
VPS29-207ENST00000549970 PNMA8BQ9ULN7 279 aaPredicted RBP16.47■□□□□ 0.23
VPS29-207ENST00000549970 CAPN11Q9UMQ6 739 aa16.47■□□□□ 0.23
VPS29-207ENST00000549970 ATP8A1Q9Y2Q0 1164 aa16.47■□□□□ 0.23
VPS29-207ENST00000549970 LUC7L2Q9Y383 392 aaKnown RBP16.47■□□□□ 0.23
VPS29-207ENST00000549970 AK5Q9Y6K8 562 aa16.47■□□□□ 0.23
VPS29-207ENST00000549970 ZFYVE26Q68DK2 2539 aa16.46■□□□□ 0.23
VPS29-207ENST00000549970 A0A087X0T9 212 aa16.46■□□□□ 0.23
VPS29-207ENST00000549970 LY6G6EA0A0G2JKS1 128 aa16.46■□□□□ 0.23
VPS29-207ENST00000549970 RIOK3O14730 519 aaKnown RBP16.46■□□□□ 0.23
VPS29-207ENST00000549970 MUSKO15146 869 aa16.46■□□□□ 0.23
VPS29-207ENST00000549970 LZTS3O60299 673 aaPredicted RBP16.46■□□□□ 0.23
VPS29-207ENST00000549970 GYPCP04921 128 aa16.46■□□□□ 0.23
VPS29-207ENST00000549970 FAM228BP0C875 321 aa16.46■□□□□ 0.23
VPS29-207ENST00000549970 RARAP10276 462 aa16.46■□□□□ 0.23
VPS29-207ENST00000549970 EIF4A3P38919 411 aaKnown RBP16.46■□□□□ 0.23
VPS29-207ENST00000549970 MMP12P39900 470 aa16.46■□□□□ 0.23
VPS29-207ENST00000549970 CSNK1DP48730 415 aa16.46■□□□□ 0.23
VPS29-207ENST00000549970 LIG3P49916 1009 aa16.46■□□□□ 0.23
VPS29-207ENST00000549970 SCNN1BP51168 640 aa16.46■□□□□ 0.23
VPS29-207ENST00000549970 YPEL5P62699 121 aa16.46■□□□□ 0.23
VPS29-207ENST00000549970 BCL2L1Q07817 233 aa16.46■□□□□ 0.23
VPS29-207ENST00000549970 C1orf61Q13536 156 aa16.46■□□□□ 0.23
VPS29-207ENST00000549970 RFTN1Q14699 578 aaPredicted RBP16.46■□□□□ 0.23
VPS29-207ENST00000549970 LBRQ14739 615 aaKnown RBP16.46■□□□□ 0.23
VPS29-207ENST00000549970 LRRC14Q15048 493 aa16.46■□□□□ 0.23
VPS29-207ENST00000549970 WSCD2Q2TBF2 565 aa16.46■□□□□ 0.23
VPS29-207ENST00000549970 TXNRD3NBQ6F5E7 133 aa16.46■□□□□ 0.23
VPS29-207ENST00000549970 ZCCHC8Q6NZY4 707 aaKnown RBP16.46■□□□□ 0.23
VPS29-207ENST00000549970 TMCO3Q6UWJ1 677 aa16.46■□□□□ 0.23
VPS29-207ENST00000549970 MACC1Q6ZN28 852 aa16.46■□□□□ 0.23
VPS29-207ENST00000549970 POLNQ7Z5Q5 900 aa16.46■□□□□ 0.23
VPS29-207ENST00000549970 PHACTR4Q8IZ21 702 aa16.46■□□□□ 0.23
VPS29-207ENST00000549970 FAM181AQ8N9Y4 354 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms