RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 TM9SF1O15321 606 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 GSRP00390 522 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 AHSGP02765 367 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 PRSS56P0CW18 603 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 ALADP13716 330 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 HLA-FP30511 346 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 GBP2P32456 591 aaPredicted RBP12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 MAGEA12P43365 314 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 NRIP1P48552 1158 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 STK19P49842 368 aaPredicted RBP12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 IRF9Q00978 393 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 USP4Q13107 963 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 PDK4Q16654 411 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 MPPE1Q53F39 396 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 LGSNQ5TDP6 509 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 PDPK2PQ6A1A2 396 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 NCEH1Q6PIU2 408 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 TMC5Q6UXY8 1006 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 CPLX4Q7Z7G2 160 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 LDB1Q86U70 411 aaPredicted RBP12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 ZC3HC1Q86WB0 502 aaKnown RBP12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 CNTN4Q8IWV2 1026 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 PLD6Q8N2A8 252 aaKnown RBP12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 DCAF4L2Q8NA75 395 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 OR13C4Q8NGS5 318 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 FIBINQ8TAL6 211 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 BLOC1S5Q8TDH9 187 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 IFT43Q96FT9 208 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 VPS39Q96JC1 886 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 SEC16BQ96JE7 1060 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 DNAJC1Q96KC8 554 aaKnown RBP12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 GDF15Q99988 308 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 ELAC2Q9BQ52 826 aaKnown RBP12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 TDRD1Q9BXT4 1180 aaKnown RBP12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 TM6SF2Q9BZW4 377 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 SUDS3Q9H7L9 328 aaPredicted RBP12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 SNX15Q9NRS6 342 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 MKS1Q9NXB0 559 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 MARCH4Q9P2E8 410 aaPredicted RBP12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 ZNF510Q9Y2H8 683 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 PLLPQ9Y342 182 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 RAI2Q9Y5P3 530 aa12.37□□□□□ -0.43
AP003559.1-201ENST00000540906 HEATR9A2RTY3 570 aa12.36□□□□□ -0.43
AP003559.1-201ENST00000540906 TYW5A2RUC4 315 aaKnown RBP12.36□□□□□ -0.43
AP003559.1-201ENST00000540906 SIN3BO75182 1162 aa12.36□□□□□ -0.43
AP003559.1-201ENST00000540906 XYLBO75191 536 aa12.36□□□□□ -0.43
AP003559.1-201ENST00000540906 ZNF821O75541 412 aaPredicted RBP12.36□□□□□ -0.43
AP003559.1-201ENST00000540906 NDST3O95803 873 aa12.36□□□□□ -0.43
AP003559.1-201ENST00000540906 FGF1P05230 155 aa12.36□□□□□ -0.43
AP003559.1-201ENST00000540906 PFKLP17858 780 aa12.36□□□□□ -0.43
AP003559.1-201ENST00000540906 SLC8A1P32418 973 aa12.36□□□□□ -0.43
AP003559.1-201ENST00000540906 CSRP3P50461 194 aa12.36□□□□□ -0.43
AP003559.1-201ENST00000540906 IRX4P78413 519 aa12.36□□□□□ -0.43
AP003559.1-201ENST00000540906 DUSP6Q16828 381 aa12.36□□□□□ -0.43
AP003559.1-201ENST00000540906 PLEKHG6Q3KR16 790 aa12.36□□□□□ -0.43
AP003559.1-201ENST00000540906 FUT11Q495W5 492 aa12.36□□□□□ -0.43
AP003559.1-201ENST00000540906 PIGWQ7Z7B1 504 aa12.36□□□□□ -0.43
AP003559.1-201ENST00000540906 ARID3BQ8IVW6 561 aaPredicted RBP12.36□□□□□ -0.43
AP003559.1-201ENST00000540906 ARMC2Q8NEN0 867 aa12.36□□□□□ -0.43
AP003559.1-201ENST00000540906 LPCAT1Q8NF37 534 aa12.36□□□□□ -0.43
AP003559.1-201ENST00000540906 PTCD2Q8WV60 388 aaKnown RBP12.36□□□□□ -0.43
AP003559.1-201ENST00000540906 ZNF75CPQ92670 426 aaPredicted RBP12.36□□□□□ -0.43
AP003559.1-201ENST00000540906 ISL2Q96A47 359 aa12.36□□□□□ -0.43
AP003559.1-201ENST00000540906 RPL10LQ96L21 214 aaKnown RBP12.36□□□□□ -0.43
AP003559.1-201ENST00000540906 APOL5Q9BWW9 433 aa12.36□□□□□ -0.43
AP003559.1-201ENST00000540906 FBXO6Q9NRD1 293 aaPredicted RBP12.36□□□□□ -0.43
AP003559.1-201ENST00000540906 ABCB8Q9NUT2 735 aa12.36□□□□□ -0.43
AP003559.1-201ENST00000540906 MTF2Q9Y483 593 aaPredicted RBP12.36□□□□□ -0.43
AP003559.1-201ENST00000540906 PRRC2BQ5JSZ5 2229 aaKnown RBP12.36□□□□□ -0.43
AP003559.1-201ENST00000540906 NEDD8-MDP1E9PL57 170 aa12.35□□□□□ -0.43
AP003559.1-201ENST00000540906 PENKP01210 267 aaPredicted RBP12.35□□□□□ -0.43
AP003559.1-201ENST00000540906 EPOP01588 193 aa12.35□□□□□ -0.43
AP003559.1-201ENST00000540906 HLA-DPA1P20036 260 aa12.35□□□□□ -0.43
AP003559.1-201ENST00000540906 BGNP21810 368 aa12.35□□□□□ -0.43
AP003559.1-201ENST00000540906 SP100P23497 879 aaPredicted RBP12.35□□□□□ -0.43
AP003559.1-201ENST00000540906 DDX6P26196 483 aaKnown RBP eCLIP12.35□□□□□ -0.43
AP003559.1-201ENST00000540906 CNTFP26441 200 aa12.35□□□□□ -0.43
AP003559.1-201ENST00000540906 SERPINB4P48594 390 aa12.35□□□□□ -0.43
AP003559.1-201ENST00000540906 RHOAP61586 193 aa12.35□□□□□ -0.43
AP003559.1-201ENST00000540906 KCNC3Q14003 757 aa12.35□□□□□ -0.43
AP003559.1-201ENST00000540906 ZNF460Q14592 562 aa12.35□□□□□ -0.43
AP003559.1-201ENST00000540906 ARHGAP15Q53QZ3 475 aa12.35□□□□□ -0.43
AP003559.1-201ENST00000540906 MPP7Q5T2T1 576 aa12.35□□□□□ -0.43
AP003559.1-201ENST00000540906 ZNF470Q6ECI4 717 aa12.35□□□□□ -0.43
AP003559.1-201ENST00000540906 RTL10Q7L3V2 364 aa12.35□□□□□ -0.43
AP003559.1-201ENST00000540906 SLC41A1Q8IVJ1 513 aa12.35□□□□□ -0.43
AP003559.1-201ENST00000540906 BBS5Q8N3I7 341 aa12.35□□□□□ -0.43
AP003559.1-201ENST00000540906 MDGA1Q8NFP4 955 aa12.35□□□□□ -0.43
AP003559.1-201ENST00000540906 SMG7Q92540 1137 aaKnown RBP12.35□□□□□ -0.43
AP003559.1-201ENST00000540906 HDAC10Q969S8 669 aa12.35□□□□□ -0.43
AP003559.1-201ENST00000540906 THOC1Q96FV9 657 aaKnown RBP12.35□□□□□ -0.43
AP003559.1-201ENST00000540906 TBATAQ96M53 351 aa12.35□□□□□ -0.43
AP003559.1-201ENST00000540906 TNKS2Q9H2K2 1166 aa12.35□□□□□ -0.43
AP003559.1-201ENST00000540906 TLE6Q9H808 572 aa12.35□□□□□ -0.43
AP003559.1-201ENST00000540906 ZDHHC7Q9NXF8 308 aa12.35□□□□□ -0.43
AP003559.1-201ENST00000540906 HAUS5O94927 633 aa12.34□□□□□ -0.43
AP003559.1-201ENST00000540906 FGF19O95750 216 aa12.34□□□□□ -0.43
AP003559.1-201ENST00000540906 CRHR1P34998 444 aa12.34□□□□□ -0.43
AP003559.1-201ENST00000540906 SPRP35270 261 aaPredicted RBP12.34□□□□□ -0.43
AP003559.1-201ENST00000540906 CSE1LP55060 971 aaKnown RBP12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms