RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 SKIDA1Q1XH10 827 aa11.76□□□□□ -0.53
CLSTN3-209ENST00000539982 SLC25A52Q3SY17 297 aa11.76□□□□□ -0.53
CLSTN3-209ENST00000539982 C4orf17Q53FE4 359 aa11.76□□□□□ -0.53
CLSTN3-209ENST00000539982 TTI2Q6NXR4 508 aa11.76□□□□□ -0.53
CLSTN3-209ENST00000539982 GDPD4Q6W3E5 623 aa11.76□□□□□ -0.53
CLSTN3-209ENST00000539982 SLITRK4Q8IW52 837 aa11.76□□□□□ -0.53
CLSTN3-209ENST00000539982 DRC7Q8IY82 874 aa11.76□□□□□ -0.53
CLSTN3-209ENST00000539982 FMR1NBQ8N0W7 255 aaPredicted RBP11.76□□□□□ -0.53
CLSTN3-209ENST00000539982 ARHGEF2Q92974 986 aaKnown RBP11.76□□□□□ -0.53
CLSTN3-209ENST00000539982 SMARCE1Q969G3 411 aa11.76□□□□□ -0.53
CLSTN3-209ENST00000539982 TBCBQ99426 244 aa11.76□□□□□ -0.53
CLSTN3-209ENST00000539982 PPARGC1AQ9UBK2 798 aaKnown RBP11.76□□□□□ -0.53
CLSTN3-209ENST00000539982 ANAPC2Q9UJX6 822 aa11.76□□□□□ -0.53
CLSTN3-209ENST00000539982 MAN2B2Q9Y2E5 1009 aa11.76□□□□□ -0.53
CLSTN3-209ENST00000539982 ZDHHC9Q9Y397 364 aa11.76□□□□□ -0.53
CLSTN3-209ENST00000539982 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.76□□□□□ -0.53
CLSTN3-209ENST00000539982 DOCK4Q8N1I0 1966 aa11.76□□□□□ -0.53
CLSTN3-209ENST00000539982 RELNP78509 3460 aa11.75□□□□□ -0.53
CLSTN3-209ENST00000539982 STMND1H3BQB6 276 aa11.75□□□□□ -0.53
CLSTN3-209ENST00000539982 GNA14O95837 355 aa11.75□□□□□ -0.53
CLSTN3-209ENST00000539982 TNFP01375 233 aa11.75□□□□□ -0.53
CLSTN3-209ENST00000539982 TIMP2P16035 220 aa11.75□□□□□ -0.53
CLSTN3-209ENST00000539982 CD44P16070 742 aaKnown RBP11.75□□□□□ -0.53
CLSTN3-209ENST00000539982 ITIH2P19823 946 aa11.75□□□□□ -0.53
CLSTN3-209ENST00000539982 KRT9P35527 623 aa11.75□□□□□ -0.53
CLSTN3-209ENST00000539982 ACVRL1P37023 503 aa11.75□□□□□ -0.53
CLSTN3-209ENST00000539982 PPP1R2P41236 205 aa11.75□□□□□ -0.53
CLSTN3-209ENST00000539982 MARSP56192 900 aaKnown RBP11.75□□□□□ -0.53
CLSTN3-209ENST00000539982 POLE2P56282 527 aa11.75□□□□□ -0.53
CLSTN3-209ENST00000539982 PTK2Q05397 1052 aa11.75□□□□□ -0.53
CLSTN3-209ENST00000539982 ARHGAP44Q17R89 818 aa11.75□□□□□ -0.53
CLSTN3-209ENST00000539982 WSCD2Q2TBF2 565 aa11.75□□□□□ -0.53
CLSTN3-209ENST00000539982 PTPN20Q4JDL3 420 aa11.75□□□□□ -0.53
CLSTN3-209ENST00000539982 LRRC73Q5JTD7 316 aa11.75□□□□□ -0.53
CLSTN3-209ENST00000539982 CERCAMQ5T4B2 595 aa11.75□□□□□ -0.53
CLSTN3-209ENST00000539982 PHF19Q5T6S3 580 aa11.75□□□□□ -0.53
CLSTN3-209ENST00000539982 GJB7Q6PEY0 223 aa11.75□□□□□ -0.53
CLSTN3-209ENST00000539982 FOXR2Q6PJQ5 311 aa11.75□□□□□ -0.53
CLSTN3-209ENST00000539982 TMPRSS9Q7Z410 1059 aa11.75□□□□□ -0.53
CLSTN3-209ENST00000539982 SPRED1Q7Z699 444 aa11.75□□□□□ -0.53
CLSTN3-209ENST00000539982 ATL2Q8NHH9 583 aa11.75□□□□□ -0.53
CLSTN3-209ENST00000539982 NKD1Q969G9 470 aa11.75□□□□□ -0.53
CLSTN3-209ENST00000539982 PSMG3-AS1Q96PY0 264 aa11.75□□□□□ -0.53
CLSTN3-209ENST00000539982 RBM15Q96T37 977 aaKnown RBP eCLIP11.75□□□□□ -0.53
CLSTN3-209ENST00000539982 WRAP53Q9BUR4 548 aaKnown RBP11.75□□□□□ -0.53
CLSTN3-209ENST00000539982 APOOQ9BUR5 198 aa11.75□□□□□ -0.53
CLSTN3-209ENST00000539982 SEMA6CQ9H3T2 930 aa11.75□□□□□ -0.53
CLSTN3-209ENST00000539982 RETREG1Q9H6L5 497 aa11.75□□□□□ -0.53
CLSTN3-209ENST00000539982 AKAP7Q9P0M2 348 aaPredicted RBP11.75□□□□□ -0.53
CLSTN3-209ENST00000539982 LRIT1Q9P2V4 623 aa11.75□□□□□ -0.53
CLSTN3-209ENST00000539982 DKK3Q9UBP4 350 aa11.75□□□□□ -0.53
CLSTN3-209ENST00000539982 KLQ9UEF7 1012 aa11.75□□□□□ -0.53
CLSTN3-209ENST00000539982 DGKBQ9Y6T7 804 aa11.75□□□□□ -0.53
CLSTN3-209ENST00000539982 UTP20O75691 2785 aaKnown RBP11.75□□□□□ -0.53
CLSTN3-209ENST00000539982 USP9XQ93008 2570 aaPredicted RBP11.74□□□□□ -0.53
CLSTN3-209ENST00000539982 NBASA2RRP1 2371 aa11.74□□□□□ -0.53
CLSTN3-209ENST00000539982 NUDT21O43809 227 aaKnown RBP11.74□□□□□ -0.53
CLSTN3-209ENST00000539982 CCR10P46092 362 aa11.74□□□□□ -0.53
CLSTN3-209ENST00000539982 ATP1A2P50993 1020 aa11.74□□□□□ -0.53
CLSTN3-209ENST00000539982 SUOXP51687 545 aa11.74□□□□□ -0.53
CLSTN3-209ENST00000539982 RAD51Q06609 339 aa11.74□□□□□ -0.53
CLSTN3-209ENST00000539982 ARHGEF7Q14155 803 aa11.74□□□□□ -0.53
CLSTN3-209ENST00000539982 INPP5AQ14642 412 aa11.74□□□□□ -0.53
CLSTN3-209ENST00000539982 C16orf72Q14CZ0 275 aa11.74□□□□□ -0.53
CLSTN3-209ENST00000539982 NCAPHQ15003 741 aa11.74□□□□□ -0.53
CLSTN3-209ENST00000539982 TMEM52BQ4KMG9 183 aa11.74□□□□□ -0.53
CLSTN3-209ENST00000539982 C14orf28Q4W4Y0 310 aa11.74□□□□□ -0.53
CLSTN3-209ENST00000539982 SMYD5Q6GMV2 418 aa11.74□□□□□ -0.53
CLSTN3-209ENST00000539982 ISM2Q6H9L7 571 aa11.74□□□□□ -0.53
CLSTN3-209ENST00000539982 TRIM65Q6PJ69 517 aa11.74□□□□□ -0.53
CLSTN3-209ENST00000539982 NYAP1Q6ZVC0 841 aa11.74□□□□□ -0.53
CLSTN3-209ENST00000539982 PIM3Q86V86 326 aa11.74□□□□□ -0.53
CLSTN3-209ENST00000539982 IRF2BP1Q8IU81 584 aa11.74□□□□□ -0.53
CLSTN3-209ENST00000539982 FAM26EQ8N5C1 309 aa11.74□□□□□ -0.53
CLSTN3-209ENST00000539982 FAM46DQ8NEK8 389 aa11.74□□□□□ -0.53
CLSTN3-209ENST00000539982 JPH3Q8WXH2 748 aaPredicted RBP11.74□□□□□ -0.53
CLSTN3-209ENST00000539982 SHC3Q92529 594 aa11.74□□□□□ -0.53
CLSTN3-209ENST00000539982 CDH19Q9H159 772 aa11.74□□□□□ -0.53
CLSTN3-209ENST00000539982 HPCAL4Q9UM19 191 aa11.74□□□□□ -0.53
CLSTN3-209ENST00000539982 BICDL2A1A5D9 508 aa11.73□□□□□ -0.53
CLSTN3-209ENST00000539982 CPNE6O95741 557 aa11.73□□□□□ -0.53
CLSTN3-209ENST00000539982 CCL4P13236 92 aa11.73□□□□□ -0.53
CLSTN3-209ENST00000539982 SLC9A1P19634 815 aa11.73□□□□□ -0.53
CLSTN3-209ENST00000539982 SCNN1AP37088 669 aa11.73□□□□□ -0.53
CLSTN3-209ENST00000539982 B4GALNT1Q00973 533 aa11.73□□□□□ -0.53
CLSTN3-209ENST00000539982 ELP6Q0PNE2 266 aa11.73□□□□□ -0.53
CLSTN3-209ENST00000539982 HLTFQ14527 1009 aaKnown RBP eCLIP11.73□□□□□ -0.53
CLSTN3-209ENST00000539982 ATXN7L2Q5T6C5 722 aaPredicted RBP11.73□□□□□ -0.53
CLSTN3-209ENST00000539982 KLHL10Q6JEL2 608 aa11.73□□□□□ -0.53
CLSTN3-209ENST00000539982 LEKR1Q6ZMV7 388 aa11.73□□□□□ -0.53
CLSTN3-209ENST00000539982 BNIPLQ7Z465 357 aa11.73□□□□□ -0.53
CLSTN3-209ENST00000539982 TAF8Q7Z7C8 310 aa11.73□□□□□ -0.53
CLSTN3-209ENST00000539982 GPBAR1Q8TDU6 330 aa11.73□□□□□ -0.53
CLSTN3-209ENST00000539982 NELFBQ8WX92 580 aa11.73□□□□□ -0.53
CLSTN3-209ENST00000539982 C18orf8Q96DM3 657 aa11.73□□□□□ -0.53
CLSTN3-209ENST00000539982 WDR92Q96MX6 357 aa11.73□□□□□ -0.53
CLSTN3-209ENST00000539982 GDAP1L1Q96MZ0 367 aa11.73□□□□□ -0.53
CLSTN3-209ENST00000539982 CATSPER2Q96P56 530 aa11.73□□□□□ -0.53
CLSTN3-209ENST00000539982 TAAR9Q96RI9 348 aa11.73□□□□□ -0.53
CLSTN3-209ENST00000539982 CRACR2AQ9BSW2 395 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms