RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 FAM160A2Q8N612 972 aaPredicted RBP12.1□□□□□ -0.47
CLIP1-208ENST00000537004 DCAKDQ8WVC6 231 aa12.1□□□□□ -0.47
CLIP1-208ENST00000537004 DYDC1Q8WWB3 177 aa12.1□□□□□ -0.47
CLIP1-208ENST00000537004 GAB3Q8WWW8 586 aa12.1□□□□□ -0.47
CLIP1-208ENST00000537004 LRRC39Q96DD0 335 aa12.1□□□□□ -0.47
CLIP1-208ENST00000537004 CIPCQ9C0C6 399 aa12.1□□□□□ -0.47
CLIP1-208ENST00000537004 SIK2Q9H0K1 926 aa12.1□□□□□ -0.47
CLIP1-208ENST00000537004 SLC6A17Q9H1V8 727 aa12.1□□□□□ -0.47
CLIP1-208ENST00000537004 TRABDQ9H4I3 376 aa12.1□□□□□ -0.47
CLIP1-208ENST00000537004 SENP1Q9P0U3 644 aa12.1□□□□□ -0.47
CLIP1-208ENST00000537004 EBF1Q9UH73 591 aa12.1□□□□□ -0.47
CLIP1-208ENST00000537004 SLC27A6Q9Y2P4 619 aa12.1□□□□□ -0.47
CLIP1-208ENST00000537004 CCDC163A0A0D9SF12 145 aa12.1□□□□□ -0.47
CLIP1-208ENST00000537004 MYO1CO00159 1063 aa12.1□□□□□ -0.47
CLIP1-208ENST00000537004 KCNK1O00180 336 aa12.1□□□□□ -0.47
CLIP1-208ENST00000537004 CPP00450 1065 aa12.1□□□□□ -0.47
CLIP1-208ENST00000537004 HOXB2P14652 356 aa12.1□□□□□ -0.47
CLIP1-208ENST00000537004 DRD4P21917 467 aa12.1□□□□□ -0.47
CLIP1-208ENST00000537004 CCR1P32246 355 aa12.1□□□□□ -0.47
CLIP1-208ENST00000537004 STX2P32856 288 aa12.1□□□□□ -0.47
CLIP1-208ENST00000537004 SERPINB6P35237 376 aa12.1□□□□□ -0.47
CLIP1-208ENST00000537004 GRIA1P42261 906 aa12.1□□□□□ -0.47
CLIP1-208ENST00000537004 MSH2P43246 934 aa12.1□□□□□ -0.47
CLIP1-208ENST00000537004 SARNPP82979 210 aaKnown RBP12.1□□□□□ -0.47
CLIP1-208ENST00000537004 CDK16Q00536 496 aa12.1□□□□□ -0.47
CLIP1-208ENST00000537004 QPCTQ16769 361 aa12.1□□□□□ -0.47
CLIP1-208ENST00000537004 KBTBD12Q3ZCT8 623 aa12.1□□□□□ -0.47
CLIP1-208ENST00000537004 EOGTQ5NDL2 527 aa12.1□□□□□ -0.47
CLIP1-208ENST00000537004 RASSF3Q86WH2 238 aa12.1□□□□□ -0.47
CLIP1-208ENST00000537004 SIGLEC10Q96LC7 697 aa12.1□□□□□ -0.47
CLIP1-208ENST00000537004 HAPLN3Q96S86 360 aa12.1□□□□□ -0.47
CLIP1-208ENST00000537004 MLXIPLQ9NP71 852 aa12.1□□□□□ -0.47
CLIP1-208ENST00000537004 PARD6AQ9NPB6 346 aa12.1□□□□□ -0.47
CLIP1-208ENST00000537004 EIF2B3Q9NR50 452 aaKnown RBP12.1□□□□□ -0.47
CLIP1-208ENST00000537004 ABCB8Q9NUT2 735 aa12.1□□□□□ -0.47
CLIP1-208ENST00000537004 NKIRAS1Q9NYS0 192 aa12.1□□□□□ -0.47
CLIP1-208ENST00000537004 RAB23Q9ULC3 237 aa12.1□□□□□ -0.47
CLIP1-208ENST00000537004 MYLKQ15746 1914 aa12.09□□□□□ -0.47
CLIP1-208ENST00000537004 ABCA7Q8IZY2 2146 aa12.09□□□□□ -0.47
CLIP1-208ENST00000537004 SPTBN2O15020 2390 aa12.09□□□□□ -0.47
CLIP1-208ENST00000537004 FAM47DPA6NHR8 397 aa12.09□□□□□ -0.47
CLIP1-208ENST00000537004 PAGE1O75459 146 aa12.09□□□□□ -0.47
CLIP1-208ENST00000537004 LATS1O95835 1130 aa12.09□□□□□ -0.47
CLIP1-208ENST00000537004 MX2P20592 715 aa12.09□□□□□ -0.47
CLIP1-208ENST00000537004 TGM1P22735 817 aa12.09□□□□□ -0.47
CLIP1-208ENST00000537004 PTPN3P26045 913 aa12.09□□□□□ -0.47
CLIP1-208ENST00000537004 PSMB4P28070 264 aa12.09□□□□□ -0.47
CLIP1-208ENST00000537004 CD70P32970 193 aa12.09□□□□□ -0.47
CLIP1-208ENST00000537004 CNR2P34972 360 aa12.09□□□□□ -0.47
CLIP1-208ENST00000537004 IL12RB1P42701 662 aa12.09□□□□□ -0.47
CLIP1-208ENST00000537004 SPEM2Q0P670 501 aa12.09□□□□□ -0.47
CLIP1-208ENST00000537004 GALNT2Q10471 571 aa12.09□□□□□ -0.47
CLIP1-208ENST00000537004 PARP6Q2NL67 630 aa12.09□□□□□ -0.47
CLIP1-208ENST00000537004 RAP1GAP2Q684P5 730 aa12.09□□□□□ -0.47
CLIP1-208ENST00000537004 RWDD4Q6NW29 188 aaKnown RBP12.09□□□□□ -0.47
CLIP1-208ENST00000537004 CPLX4Q7Z7G2 160 aa12.09□□□□□ -0.47
CLIP1-208ENST00000537004 PGBD3Q8N328 593 aa12.09□□□□□ -0.47
CLIP1-208ENST00000537004 PDCD7Q8N8D1 485 aaKnown RBP12.09□□□□□ -0.47
CLIP1-208ENST00000537004 CYB5D2Q8WUJ1 264 aa12.09□□□□□ -0.47
CLIP1-208ENST00000537004 HDAC11Q96DB2 347 aa12.09□□□□□ -0.47
CLIP1-208ENST00000537004 SMC6Q96SB8 1091 aa12.09□□□□□ -0.47
CLIP1-208ENST00000537004 BRD8Q9H0E9 1235 aa12.09□□□□□ -0.47
CLIP1-208ENST00000537004 CD248Q9HCU0 757 aa12.09□□□□□ -0.47
CLIP1-208ENST00000537004 CD93Q9NPY3 652 aa12.09□□□□□ -0.47
CLIP1-208ENST00000537004 ELOVL2Q9NXB9 296 aa12.09□□□□□ -0.47
CLIP1-208ENST00000537004 NEU3Q9UQ49 428 aa12.09□□□□□ -0.47
CLIP1-208ENST00000537004 TTLL3Q9Y4R7 772 aa12.09□□□□□ -0.47
CLIP1-208ENST00000537004 MAD1L1Q9Y6D9 718 aa12.09□□□□□ -0.47
CLIP1-208ENST00000537004 KIAA1549LQ6ZVL6 1849 aa12.08□□□□□ -0.48
CLIP1-208ENST00000537004 A0A1W2PPM1 405 aa12.08□□□□□ -0.48
CLIP1-208ENST00000537004 MTSS1O43312 755 aa12.08□□□□□ -0.48
CLIP1-208ENST00000537004 SPAG7O75391 227 aa12.08□□□□□ -0.48
CLIP1-208ENST00000537004 MLNP12872 115 aa12.08□□□□□ -0.48
CLIP1-208ENST00000537004 BCKDHBP21953 392 aa12.08□□□□□ -0.48
CLIP1-208ENST00000537004 GARSP41250 739 aaKnown RBP12.08□□□□□ -0.48
CLIP1-208ENST00000537004 FSCBQ5H9T9 825 aa12.08□□□□□ -0.48
CLIP1-208ENST00000537004 PID1Q7Z2X4 250 aa12.08□□□□□ -0.48
CLIP1-208ENST00000537004 PRPF39Q86UA1 669 aaKnown RBP12.08□□□□□ -0.48
CLIP1-208ENST00000537004 TAX1BP1Q86VP1 789 aa12.08□□□□□ -0.48
CLIP1-208ENST00000537004 CIR1Q86X95 450 aaPredicted RBP12.08□□□□□ -0.48
CLIP1-208ENST00000537004 LGI2Q8N0V4 545 aa12.08□□□□□ -0.48
CLIP1-208ENST00000537004 C4orf33Q8N1A6 199 aa12.08□□□□□ -0.48
CLIP1-208ENST00000537004 MPP5Q8N3R9 675 aa12.08□□□□□ -0.48
CLIP1-208ENST00000537004 ZNF366Q8N895 744 aa12.08□□□□□ -0.48
CLIP1-208ENST00000537004 GDAP1Q8TB36 358 aa12.08□□□□□ -0.48
CLIP1-208ENST00000537004 EBNA1BP2Q99848 306 aaKnown RBP12.08□□□□□ -0.48
CLIP1-208ENST00000537004 PLAC1Q9HBJ0 212 aa12.08□□□□□ -0.48
CLIP1-208ENST00000537004 POLMQ9NP87 494 aaPredicted RBP12.08□□□□□ -0.48
CLIP1-208ENST00000537004 KLHL8Q9P2G9 620 aaPredicted RBP12.08□□□□□ -0.48
CLIP1-208ENST00000537004 IKBKGQ9Y6K9 419 aa12.08□□□□□ -0.48
CLIP1-208ENST00000537004 STON1Q9Y6Q2 735 aa12.08□□□□□ -0.48
CLIP1-208ENST00000537004 KCNU1A8MYU2 1149 aa12.08□□□□□ -0.48
CLIP1-208ENST00000537004 PRPF4O43172 522 aaKnown RBP eCLIP12.08□□□□□ -0.48
CLIP1-208ENST00000537004 APOEP02649 317 aa12.08□□□□□ -0.48
CLIP1-208ENST00000537004 GSTA2P09210 222 aa12.08□□□□□ -0.48
CLIP1-208ENST00000537004 GABRG2P18507 467 aa12.08□□□□□ -0.48
CLIP1-208ENST00000537004 ZNF234Q14588 700 aa12.08□□□□□ -0.48
CLIP1-208ENST00000537004 PLK5Q496M5 336 aa12.08□□□□□ -0.48
CLIP1-208ENST00000537004 HSF5Q4G112 596 aaPredicted RBP12.08□□□□□ -0.48
CLIP1-208ENST00000537004 MS4A13Q5J8X5 152 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms