RNA–Protein interactions for RNA: ENST00000535717.1

CHD4-203, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2

Gene CHD4, Length 660 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-203ENST00000535717 CEP192Q8TEP8 1941 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 TBC1D3DA0A087WVF3 549 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 TBC1D3IA0A087WXS9 549 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 TBC1D3EA0A087X179 549 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 TBC1D3KA0A087X1G2 549 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 CTAGE9A4FU28 777 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 TBC1D3FA6NER0 549 aaPredicted RBP12.16□□□□□ -0.46
CHD4-203ENST00000535717 PRR23AA6NEV1 266 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 METTL12A8MUP2 240 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 UPK3BL1B0FP48 263 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 TBC1D3LB9A6J9 549 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 UPK3BL2E5RIL1 263 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 CES2O00748 559 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 AREL1O15033 823 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 ZNF185O15231 689 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 AP1G1O43747 822 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 PGLSO95336 258 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 LMNAP02545 664 aaKnown RBP12.16□□□□□ -0.46
CHD4-203ENST00000535717 IGHV4-34P06331 123 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 SERPINF2P08697 491 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 TBC1D3HP0C7X1 549 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 ITIH2P19823 946 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 NFKB1P19838 968 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 DHPSP49366 369 aaPredicted RBP12.16□□□□□ -0.46
CHD4-203ENST00000535717 PPP2CBP62714 309 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 PPP2CAP67775 309 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 SNX1Q13596 522 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 CCNG2Q16589 344 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 UGP2Q16851 508 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 CFAP58Q5T655 872 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 KIAA0895LQ68EN5 471 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 TBC1D3GQ6DHY5 549 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 LAIR1Q6GTX8 287 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 TBC1D3CQ6IPX1 549 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 PID1Q7Z2X4 250 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 TBC1D3Q8IZP1 549 aaPredicted RBP12.16□□□□□ -0.46
CHD4-203ENST00000535717 PRELID2Q8N945 189 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 SPATA22Q8NHS9 363 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 PDCD6IPQ8WUM4 868 aaKnown RBP12.16□□□□□ -0.46
CHD4-203ENST00000535717 MAIP1Q8WWC4 291 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 SPOCK2Q92563 424 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 FOXJ1Q92949 421 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 RAB7BQ96AH8 199 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 TADA1Q96BN2 335 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 RBM15Q96T37 977 aaKnown RBP eCLIP12.16□□□□□ -0.46
CHD4-203ENST00000535717 FERMT1Q9BQL6 677 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 TMEM121Q9BTD3 319 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 PREBQ9HCU5 417 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 PCDH12Q9NPG4 1184 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 GGT7Q9UJ14 662 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 ITM2BQ9Y287 266 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.16□□□□□ -0.46
CHD4-203ENST00000535717 PCDHB9Q9Y5E1 797 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 OTOGLQ3ZCN5 2332 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 LAMA1P25391 3075 aa12.16□□□□□ -0.46
CHD4-203ENST00000535717 C5orf60A6NFR6 353 aa12.15□□□□□ -0.46
CHD4-203ENST00000535717 F5H423 210 aaPredicted RBP12.15□□□□□ -0.46
CHD4-203ENST00000535717 PGRMC1O00264 195 aaKnown RBP12.15□□□□□ -0.46
CHD4-203ENST00000535717 FZD6O60353 706 aa12.15□□□□□ -0.46
CHD4-203ENST00000535717 RNGTTO60942 597 aaKnown RBP12.15□□□□□ -0.46
CHD4-203ENST00000535717 ZNF189O75820 626 aaPredicted RBP12.15□□□□□ -0.46
CHD4-203ENST00000535717 STK10O94804 968 aaKnown RBP12.15□□□□□ -0.46
CHD4-203ENST00000535717 FSBPO95073 299 aa12.15□□□□□ -0.46
CHD4-203ENST00000535717 CPP00450 1065 aa12.15□□□□□ -0.46
CHD4-203ENST00000535717 PRKCGP05129 697 aa12.15□□□□□ -0.46
CHD4-203ENST00000535717 PDHA1P08559 390 aa12.15□□□□□ -0.46
CHD4-203ENST00000535717 PRLRP16471 622 aa12.15□□□□□ -0.46
CHD4-203ENST00000535717 TCP1P17987 556 aaKnown RBP12.15□□□□□ -0.46
CHD4-203ENST00000535717 XPAP23025 273 aaPredicted RBP12.15□□□□□ -0.46
CHD4-203ENST00000535717 ITPKAP23677 461 aa12.15□□□□□ -0.46
CHD4-203ENST00000535717 CCR5P51681 352 aa12.15□□□□□ -0.46
CHD4-203ENST00000535717 SUOXP51687 545 aa12.15□□□□□ -0.46
CHD4-203ENST00000535717 GDF10P55107 478 aa12.15□□□□□ -0.46
CHD4-203ENST00000535717 ETF1P62495 437 aaKnown RBP12.15□□□□□ -0.46
CHD4-203ENST00000535717 POLR2LP62875 67 aaKnown RBP12.15□□□□□ -0.46
CHD4-203ENST00000535717 ANKRD20A2Q5SQ80 823 aa12.15□□□□□ -0.46
CHD4-203ENST00000535717 ARMC12Q5T9G4 340 aa12.15□□□□□ -0.46
CHD4-203ENST00000535717 ANKRD20A1Q5TYW2 823 aa12.15□□□□□ -0.46
CHD4-203ENST00000535717 ANKRD20A3Q5VUR7 823 aa12.15□□□□□ -0.46
CHD4-203ENST00000535717 LYSMD4Q5XG99 296 aa12.15□□□□□ -0.46
CHD4-203ENST00000535717 NYAP1Q6ZVC0 841 aa12.15□□□□□ -0.46
CHD4-203ENST00000535717 PAF1Q8N7H5 531 aa12.15□□□□□ -0.46
CHD4-203ENST00000535717 CCDC110Q8TBZ0 833 aa12.15□□□□□ -0.46
CHD4-203ENST00000535717 ACTRT1Q8TDG2 376 aa12.15□□□□□ -0.46
CHD4-203ENST00000535717 BIRC7Q96CA5 298 aa12.15□□□□□ -0.46
CHD4-203ENST00000535717 LOXL4Q96JB6 756 aa12.15□□□□□ -0.46
CHD4-203ENST00000535717 SPATA13Q96N96 652 aa12.15□□□□□ -0.46
CHD4-203ENST00000535717 TDRD1Q9BXT4 1180 aaKnown RBP12.15□□□□□ -0.46
CHD4-203ENST00000535717 GBA3Q9H227 469 aa12.15□□□□□ -0.46
CHD4-203ENST00000535717 ZNF148Q9UQR1 794 aa12.15□□□□□ -0.46
CHD4-203ENST00000535717 CHKBQ9Y259 395 aa12.15□□□□□ -0.46
CHD4-203ENST00000535717 EP300Q09472 2414 aaPredicted RBP12.15□□□□□ -0.47
CHD4-203ENST00000535717 TNRC6BQ9UPQ9 1833 aaKnown RBP12.14□□□□□ -0.47
CHD4-203ENST00000535717 A0A1W2PQ67 120 aa12.14□□□□□ -0.47
CHD4-203ENST00000535717 A0A1W2PQU0 124 aa12.14□□□□□ -0.47
CHD4-203ENST00000535717 CFAP69A5D8W1 941 aa12.14□□□□□ -0.47
CHD4-203ENST00000535717 MEI4A8MW99 385 aa12.14□□□□□ -0.47
CHD4-203ENST00000535717 NEMP1O14524 444 aa12.14□□□□□ -0.47
CHD4-203ENST00000535717 RIOK3O14730 519 aaKnown RBP12.14□□□□□ -0.47
CHD4-203ENST00000535717 LATO43561 262 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms