RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 ACTN2P35609 894 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 ACVRL1P37023 503 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 NNMTP40261 264 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 TNFRSF4P43489 277 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 ARL4DP49703 201 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 CLCN5P51795 746 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 IFI35P80217 286 aaPredicted RBP7.52□□□□□ -1.21
CD44-228ENST00000528455 DR1Q01658 176 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 NHLH1Q02575 133 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 AP1B1Q10567 949 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 LMAN2Q12907 356 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 SUZ12Q15022 739 aaKnown RBP7.52□□□□□ -1.21
CD44-228ENST00000528455 PARP6Q2NL67 630 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 GAB4Q2WGN9 574 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 P3H1Q32P28 736 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 ANKRD20A2Q5SQ80 823 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 ANKRD20A1Q5TYW2 823 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 MARC1Q5VT66 337 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 ANKRD20A3Q5VUR7 823 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 IL31Q6EBC2 164 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 RETSATQ6NUM9 610 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 TTC27Q6P3X3 843 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 IGF2-ASQ6U949 168 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 GSTA5Q7RTV2 222 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 PID1Q7Z2X4 250 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 ADIPOR2Q86V24 386 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 RALGPS2Q86X27 583 aaPredicted RBP7.52□□□□□ -1.21
CD44-228ENST00000528455 CIR1Q86X95 450 aaPredicted RBP7.52□□□□□ -1.21
CD44-228ENST00000528455 TP53INP2Q8IXH6 220 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 KLHL7Q8IXQ5 586 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 APCDD1Q8J025 514 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 AHI1Q8N157 1196 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 ATPAF2Q8N5M1 289 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 NAT16Q8N8M0 369 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 KDM1BQ8NB78 822 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 FLCNQ8NFG4 579 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 OR7D4Q8NG98 312 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 WFIKKN2Q8TEU8 576 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 UBXN4Q92575 508 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 ISG20Q96AZ6 181 aaKnown RBP7.52□□□□□ -1.21
CD44-228ENST00000528455 MSANTD3Q96H12 275 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 CELF6Q96J87 481 aaKnown RBP7.52□□□□□ -1.21
CD44-228ENST00000528455 TEKT5Q96M29 485 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 QKIQ96PU8 341 aaKnown RBP eCLIP7.52□□□□□ -1.21
CD44-228ENST00000528455 PNKPQ96T60 521 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 ERP44Q9BS26 406 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 TMEM121Q9BTD3 319 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 LRRC1Q9BTT6 524 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 SLC2A4RGQ9NR83 387 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 GTSE1Q9NYZ3 720 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 GGA2Q9UJY4 613 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 PLA2G4CQ9UP65 541 aa7.52□□□□□ -1.21
CD44-228ENST00000528455 UTP11Q9Y3A2 253 aaKnown RBP7.52□□□□□ -1.21
CD44-228ENST00000528455 NYNRINQ9P2P1 1898 aaKnown RBP7.51□□□□□ -1.21
CD44-228ENST00000528455 J3KR12 359 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 SGK1O00141 431 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 CBX4O00257 560 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 NDC80O14777 642 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 NPC1O15118 1278 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 PSMD3O43242 534 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 NARSO43776 548 aaKnown RBP7.51□□□□□ -1.21
CD44-228ENST00000528455 OPHN1O60890 802 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 ECEL1O95672 775 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 JCHAINP01591 159 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 KRT14P02533 472 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 ASLP04424 464 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 SRPRAP08240 638 aaKnown RBP7.51□□□□□ -1.21
CD44-228ENST00000528455 PABPC1P11940 636 aaKnown RBP7.51□□□□□ -1.21
CD44-228ENST00000528455 POLR2EP19388 210 aaKnown RBP7.51□□□□□ -1.21
CD44-228ENST00000528455 ITIH2P19823 946 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 CD70P32970 193 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 RPL22P35268 128 aaKnown RBP7.51□□□□□ -1.21
CD44-228ENST00000528455 HSPA9P38646 679 aaKnown RBP7.51□□□□□ -1.21
CD44-228ENST00000528455 OPRD1P41143 372 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 CSKP41240 450 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 GRIA2P42262 883 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 SLC6A11P48066 632 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 CSNK1DP48730 415 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 GALK1P51570 392 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 ECT2LQ008S8 904 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 GSTM4Q03013 218 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 C2orf54Q08AI8 447 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 WASHC5Q12768 1159 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 EIF4HQ15056 248 aaKnown RBP7.51□□□□□ -1.21
CD44-228ENST00000528455 PPP1R7Q15435 360 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 PLEKHG6Q3KR16 790 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 SLC44A4Q53GD3 710 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 PITRM1Q5JRX3 1037 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 RALGPS1Q5JS13 557 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 C8orf74Q6P047 294 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 PCGF5Q86SE9 256 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 BBS5Q8N3I7 341 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 EIF1ADQ8N9N8 165 aaKnown RBP7.51□□□□□ -1.21
CD44-228ENST00000528455 FAM71DQ8N9W8 422 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 DCAF4L2Q8NA75 395 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 NOA1Q8NC60 698 aaKnown RBP7.51□□□□□ -1.21
CD44-228ENST00000528455 BBOF1Q8ND07 529 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 PRSS33Q8NF86 280 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 WFDC5Q8TCV5 224 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 SEC14L1Q92503 715 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms