RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 CASKIN2Q8WXE0 1202 aa23.83■■□□□ 1.41
CPSF1-202ENST00000527827 NTAN1Q96AB6 310 aa23.83■■□□□ 1.41
CPSF1-202ENST00000527827 LIN37Q96GY3 246 aaPredicted RBP23.83■■□□□ 1.41
CPSF1-202ENST00000527827 SYNDIG1Q9H7V2 258 aa23.83■■□□□ 1.41
CPSF1-202ENST00000527827 GULP1Q9UBP9 304 aa23.83■■□□□ 1.41
CPSF1-202ENST00000527827 COQ6Q9Y2Z9 468 aa23.83■■□□□ 1.41
CPSF1-202ENST00000527827 MYO18BQ8IUG5 2567 aa23.83■■□□□ 1.4
CPSF1-202ENST00000527827 B8ZZF3 427 aa23.82■■□□□ 1.4
CPSF1-202ENST00000527827 INSIG1O15503 277 aa23.82■■□□□ 1.4
CPSF1-202ENST00000527827 IGSF6O95976 241 aa23.82■■□□□ 1.4
CPSF1-202ENST00000527827 ITGA2BP08514 1039 aa23.82■■□□□ 1.4
CPSF1-202ENST00000527827 HK3P52790 923 aa23.82■■□□□ 1.4
CPSF1-202ENST00000527827 RHOAP61586 193 aa23.82■■□□□ 1.4
CPSF1-202ENST00000527827 INO80DQ53TQ3 878 aaPredicted RBP23.82■■□□□ 1.4
CPSF1-202ENST00000527827 CCDC81Q6ZN84 652 aa23.82■■□□□ 1.4
CPSF1-202ENST00000527827 NYAP1Q6ZVC0 841 aa23.82■■□□□ 1.4
CPSF1-202ENST00000527827 B3GNT8Q7Z7M8 397 aa23.82■■□□□ 1.4
CPSF1-202ENST00000527827 PYROXD2Q8N2H3 581 aa23.82■■□□□ 1.4
CPSF1-202ENST00000527827 ARL10Q8N8L6 244 aa23.82■■□□□ 1.4
CPSF1-202ENST00000527827 RTL3Q8N8U3 475 aaKnown RBP23.82■■□□□ 1.4
CPSF1-202ENST00000527827 KYQ8NBH2 561 aa23.82■■□□□ 1.4
CPSF1-202ENST00000527827 PCDH19Q8TAB3 1148 aa23.82■■□□□ 1.4
CPSF1-202ENST00000527827 TSACCQ96A04 125 aaPredicted RBP23.82■■□□□ 1.4
CPSF1-202ENST00000527827 COL26A1Q96A83 441 aa23.82■■□□□ 1.4
CPSF1-202ENST00000527827 MED8Q96G25 268 aa23.82■■□□□ 1.4
CPSF1-202ENST00000527827 SCN8AQ9UQD0 1980 aa23.82■■□□□ 1.4
CPSF1-202ENST00000527827 RFC1P35251 1148 aaPredicted RBP23.81■■□□□ 1.4
CPSF1-202ENST00000527827 PEX5P50542 639 aa23.81■■□□□ 1.4
CPSF1-202ENST00000527827 BLKP51451 505 aa23.81■■□□□ 1.4
CPSF1-202ENST00000527827 ELOCQ15369 112 aa23.81■■□□□ 1.4
CPSF1-202ENST00000527827 TCEA2Q15560 299 aa23.81■■□□□ 1.4
CPSF1-202ENST00000527827 ALG11Q2TAA5 492 aa23.81■■□□□ 1.4
CPSF1-202ENST00000527827 WSCD2Q2TBF2 565 aa23.81■■□□□ 1.4
CPSF1-202ENST00000527827 LVRNQ6Q4G3 990 aa23.81■■□□□ 1.4
CPSF1-202ENST00000527827 ZNF354CQ86Y25 554 aa23.81■■□□□ 1.4
CPSF1-202ENST00000527827 HID1Q8IV36 788 aa23.81■■□□□ 1.4
CPSF1-202ENST00000527827 CCDC74AQ96AQ1 378 aa23.81■■□□□ 1.4
CPSF1-202ENST00000527827 EDEM3Q9BZQ6 932 aa23.81■■□□□ 1.4
CPSF1-202ENST00000527827 CLSTN2Q9H4D0 955 aa23.81■■□□□ 1.4
CPSF1-202ENST00000527827 SIRPGQ9P1W8 387 aa23.81■■□□□ 1.4
CPSF1-202ENST00000527827 LHX3Q9UBR4 397 aa23.81■■□□□ 1.4
CPSF1-202ENST00000527827 DOLKQ9UPQ8 538 aa23.81■■□□□ 1.4
CPSF1-202ENST00000527827 AHCTF1Q8WYP5 2266 aa23.81■■□□□ 1.4
CPSF1-202ENST00000527827 ANKRD36A6QL64 1941 aa23.8■■□□□ 1.4
CPSF1-202ENST00000527827 UNC13CQ8NB66 2214 aa23.8■■□□□ 1.4
CPSF1-202ENST00000527827 EFSO43281 561 aa23.8■■□□□ 1.4
CPSF1-202ENST00000527827 PIGNO95427 931 aa23.8■■□□□ 1.4
CPSF1-202ENST00000527827 UNGP13051 313 aaPredicted RBP23.8■■□□□ 1.4
CPSF1-202ENST00000527827 KLK7P49862 253 aa23.8■■□□□ 1.4
CPSF1-202ENST00000527827 LRRC14Q15048 493 aa23.8■■□□□ 1.4
CPSF1-202ENST00000527827 ZSCAN23Q3MJ62 389 aa23.8■■□□□ 1.4
CPSF1-202ENST00000527827 TCP11X2Q5H9J9 407 aa23.8■■□□□ 1.4
CPSF1-202ENST00000527827 SLFN11Q7Z7L1 901 aa23.8■■□□□ 1.4
CPSF1-202ENST00000527827 HMCESQ96FZ2 354 aa23.8■■□□□ 1.4
CPSF1-202ENST00000527827 PCDHB18PQ96TA0 734 aa23.8■■□□□ 1.4
CPSF1-202ENST00000527827 CPEB1Q9BZB8 566 aaKnown RBP23.8■■□□□ 1.4
CPSF1-202ENST00000527827 TAB2Q9NYJ8 693 aa23.8■■□□□ 1.4
CPSF1-202ENST00000527827 TMEM110-MUSTN1A8MSY1 372 aa23.79■■□□□ 1.4
CPSF1-202ENST00000527827 RASA4BC9J798 803 aa23.79■■□□□ 1.4
CPSF1-202ENST00000527827 PLD2O14939 933 aa23.79■■□□□ 1.4
CPSF1-202ENST00000527827 RASA4O43374 803 aa23.79■■□□□ 1.4
CPSF1-202ENST00000527827 RASGRP1O95267 797 aa23.79■■□□□ 1.4
CPSF1-202ENST00000527827 ALPIP09923 528 aa23.79■■□□□ 1.4
CPSF1-202ENST00000527827 KRT3P12035 628 aa23.79■■□□□ 1.4
CPSF1-202ENST00000527827 EPHB2P29323 1055 aa23.79■■□□□ 1.4
CPSF1-202ENST00000527827 SUOXP51687 545 aa23.79■■□□□ 1.4
CPSF1-202ENST00000527827 GSCP56915 257 aaPredicted RBP23.79■■□□□ 1.4
CPSF1-202ENST00000527827 JAM2P57087 298 aa23.79■■□□□ 1.4
CPSF1-202ENST00000527827 YBEYP58557 167 aaPredicted RBP23.79■■□□□ 1.4
CPSF1-202ENST00000527827 CCL7P80098 99 aa23.79■■□□□ 1.4
CPSF1-202ENST00000527827 SERINC3Q13530 473 aa23.79■■□□□ 1.4
CPSF1-202ENST00000527827 CYTH1Q15438 398 aa23.79■■□□□ 1.4
CPSF1-202ENST00000527827 WDR59Q6PJI9 974 aa23.79■■□□□ 1.4
CPSF1-202ENST00000527827 SCG3Q8WXD2 468 aaKnown RBP23.79■■□□□ 1.4
CPSF1-202ENST00000527827 EXOC2Q96KP1 924 aa23.79■■□□□ 1.4
CPSF1-202ENST00000527827 CCNL2Q96S94 520 aaPredicted RBP23.79■■□□□ 1.4
CPSF1-202ENST00000527827 EPB41L5Q9HCM4 733 aa23.79■■□□□ 1.4
CPSF1-202ENST00000527827 GPR34Q9UPC5 381 aa23.79■■□□□ 1.4
CPSF1-202ENST00000527827 A0A1W2PQM1 296 aa23.78■■□□□ 1.4
CPSF1-202ENST00000527827 TSPAN11A1L157 253 aa23.78■■□□□ 1.4
CPSF1-202ENST00000527827 D6RAR5 112 aa23.78■■□□□ 1.4
CPSF1-202ENST00000527827 KRT10P13645 584 aa23.78■■□□□ 1.4
CPSF1-202ENST00000527827 CTSEP14091 401 aa23.78■■□□□ 1.4
CPSF1-202ENST00000527827 GPD1P21695 349 aa23.78■■□□□ 1.4
CPSF1-202ENST00000527827 XPAP23025 273 aaPredicted RBP23.78■■□□□ 1.4
CPSF1-202ENST00000527827 EEF1GP26641 437 aaKnown RBP23.78■■□□□ 1.4
CPSF1-202ENST00000527827 SLC5A2P31639 672 aa23.78■■□□□ 1.4
CPSF1-202ENST00000527827 UGT1A5P35504 534 aa23.78■■□□□ 1.4
CPSF1-202ENST00000527827 SOX5P35711 763 aa23.78■■□□□ 1.4
CPSF1-202ENST00000527827 ELP6Q0PNE2 266 aa23.78■■□□□ 1.4
CPSF1-202ENST00000527827 NFATC4Q14934 902 aa23.78■■□□□ 1.4
CPSF1-202ENST00000527827 KCTD16Q68DU8 428 aa23.78■■□□□ 1.4
CPSF1-202ENST00000527827 ENPP7Q6UWV6 458 aa23.78■■□□□ 1.4
CPSF1-202ENST00000527827 TRIM72Q6ZMU5 477 aa23.78■■□□□ 1.4
CPSF1-202ENST00000527827 RD3Q7Z3Z2 195 aa23.78■■□□□ 1.4
CPSF1-202ENST00000527827 SDR16C5Q8N3Y7 309 aa23.78■■□□□ 1.4
CPSF1-202ENST00000527827 FBXO39Q8N4B4 442 aa23.78■■□□□ 1.4
CPSF1-202ENST00000527827 HCAR2Q8TDS4 363 aa23.78■■□□□ 1.4
CPSF1-202ENST00000527827 GFM1Q96RP9 751 aaKnown RBP23.78■■□□□ 1.4
CPSF1-202ENST00000527827 APOOQ9BUR5 198 aa23.78■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms