RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 PIP4K2CQ8TBX8 421 aa21.4■■□□□ 1.02
VPS28-205ENST00000526204 ZYG11BQ9C0D3 744 aa21.4■■□□□ 1.02
VPS28-205ENST00000526204 NT5MQ9NPB1 228 aa21.4■■□□□ 1.02
VPS28-205ENST00000526204 SDHDO14521 159 aa21.39■■□□□ 1.01
VPS28-205ENST00000526204 ZNF157P51786 506 aaPredicted RBP21.39■■□□□ 1.01
VPS28-205ENST00000526204 GALNT1Q10472 559 aaPredicted RBP21.39■■□□□ 1.01
VPS28-205ENST00000526204 ACAP2Q15057 778 aa21.39■■□□□ 1.01
VPS28-205ENST00000526204 MMEL1Q495T6 779 aa21.39■■□□□ 1.01
VPS28-205ENST00000526204 RBM20Q5T481 1227 aaKnown RBP21.39■■□□□ 1.01
VPS28-205ENST00000526204 SLC22A9Q8IVM8 553 aa21.39■■□□□ 1.01
VPS28-205ENST00000526204 DLG3Q92796 817 aa21.39■■□□□ 1.01
VPS28-205ENST00000526204 SGF29Q96ES7 293 aa21.39■■□□□ 1.01
VPS28-205ENST00000526204 FUBP3Q96I24 572 aaKnown RBP eCLIP21.39■■□□□ 1.01
VPS28-205ENST00000526204 PRDM5Q9NQX1 630 aaPredicted RBP21.39■■□□□ 1.01
VPS28-205ENST00000526204 TMEM248Q9NWD8 314 aa21.39■■□□□ 1.01
VPS28-205ENST00000526204 GTSE1Q9NYZ3 720 aa21.39■■□□□ 1.01
VPS28-205ENST00000526204 PCNTO95613 3336 aa21.39■■□□□ 1.01
VPS28-205ENST00000526204 PATJQ8NI35 1801 aa21.39■■□□□ 1.01
VPS28-205ENST00000526204 SLC7A4O43246 635 aa21.38■■□□□ 1.01
VPS28-205ENST00000526204 RNASEH1O60930 286 aaKnown RBP21.38■■□□□ 1.01
VPS28-205ENST00000526204 ENO3P13929 434 aaPredicted RBP21.38■■□□□ 1.01
VPS28-205ENST00000526204 ME2P23368 584 aa21.38■■□□□ 1.01
VPS28-205ENST00000526204 SLC26A3P40879 764 aa21.38■■□□□ 1.01
VPS28-205ENST00000526204 ALDH1A3P47895 512 aa21.38■■□□□ 1.01
VPS28-205ENST00000526204 TBX4P57082 545 aa21.38■■□□□ 1.01
VPS28-205ENST00000526204 ITKQ08881 620 aa21.38■■□□□ 1.01
VPS28-205ENST00000526204 ZNF598Q86UK7 904 aaKnown RBP21.38■■□□□ 1.01
VPS28-205ENST00000526204 NUP93Q8N1F7 819 aa21.38■■□□□ 1.01
VPS28-205ENST00000526204 PELI3Q8N2H9 469 aa21.38■■□□□ 1.01
VPS28-205ENST00000526204 OLFM1Q99784 485 aa21.38■■□□□ 1.01
VPS28-205ENST00000526204 UNKQ9C0B0 810 aaKnown RBP21.38■■□□□ 1.01
VPS28-205ENST00000526204 ZCWPW1Q9H0M4 648 aa21.38■■□□□ 1.01
VPS28-205ENST00000526204 ZFYVE28Q9HCC9 887 aa21.38■■□□□ 1.01
VPS28-205ENST00000526204 ABI2Q9NYB9 513 aaPredicted RBP21.38■■□□□ 1.01
VPS28-205ENST00000526204 UTP6Q9NYH9 597 aaKnown RBP21.38■■□□□ 1.01
VPS28-205ENST00000526204 AURKAO14965 403 aa21.38■■□□□ 1.01
VPS28-205ENST00000526204 CD86P42081 329 aa21.38■■□□□ 1.01
VPS28-205ENST00000526204 SULT2A1Q06520 285 aa21.38■■□□□ 1.01
VPS28-205ENST00000526204 NFE2Q16621 373 aaPredicted RBP21.38■■□□□ 1.01
VPS28-205ENST00000526204 GRAMD1BQ3KR37 738 aa21.38■■□□□ 1.01
VPS28-205ENST00000526204 CHSY3Q70JA7 882 aa21.38■■□□□ 1.01
VPS28-205ENST00000526204 IFNL1Q8IU54 200 aa21.38■■□□□ 1.01
VPS28-205ENST00000526204 CILP2Q8IUL8 1156 aa21.38■■□□□ 1.01
VPS28-205ENST00000526204 ZNF683Q8IZ20 524 aa21.38■■□□□ 1.01
VPS28-205ENST00000526204 ST13P4Q8IZP2 240 aaPredicted RBP21.38■■□□□ 1.01
VPS28-205ENST00000526204 UBXN10Q96LJ8 280 aa21.38■■□□□ 1.01
VPS28-205ENST00000526204 C8orf48Q96LL4 319 aa21.38■■□□□ 1.01
VPS28-205ENST00000526204 NDNQ99608 321 aa21.38■■□□□ 1.01
VPS28-205ENST00000526204 DDX50Q9BQ39 737 aaKnown RBP21.38■■□□□ 1.01
VPS28-205ENST00000526204 DTNAQ9Y4J8 743 aa21.38■■□□□ 1.01
VPS28-205ENST00000526204 TCAF2A6NFQ2 919 aa21.37■■□□□ 1.01
VPS28-205ENST00000526204 TMEM233B4DJY2 109 aa21.37■■□□□ 1.01
VPS28-205ENST00000526204 CFLARO15519 480 aa21.37■■□□□ 1.01
VPS28-205ENST00000526204 OAZ2O95190 189 aa21.37■■□□□ 1.01
VPS28-205ENST00000526204 CCDC166P0CW27 439 aa21.37■■□□□ 1.01
VPS28-205ENST00000526204 TNK2Q07912 1038 aa21.37■■□□□ 1.01
VPS28-205ENST00000526204 MAPRE2Q15555 327 aa21.37■■□□□ 1.01
VPS28-205ENST00000526204 PHC3Q8NDX5 983 aa21.37■■□□□ 1.01
VPS28-205ENST00000526204 CATSPER1Q8NEC5 780 aa21.37■■□□□ 1.01
VPS28-205ENST00000526204 HMCESQ96FZ2 354 aa21.37■■□□□ 1.01
VPS28-205ENST00000526204 MRPL1Q9BYD6 325 aaKnown RBP21.37■■□□□ 1.01
VPS28-205ENST00000526204 MRPL40Q9NQ50 206 aaKnown RBP21.37■■□□□ 1.01
VPS28-205ENST00000526204 VWA7Q9Y334 891 aa21.37■■□□□ 1.01
VPS28-205ENST00000526204 MROH6A6NGR9 719 aa21.37■■□□□ 1.01
VPS28-205ENST00000526204 A8MT66 165 aa21.37■■□□□ 1.01
VPS28-205ENST00000526204 F8W810 466 aa21.37■■□□□ 1.01
VPS28-205ENST00000526204 OR4Q2P0C623 313 aa21.37■■□□□ 1.01
VPS28-205ENST00000526204 HNRNPLP14866 589 aaKnown RBP eCLIP21.37■■□□□ 1.01
VPS28-205ENST00000526204 XRCC1P18887 633 aaPredicted RBP21.37■■□□□ 1.01
VPS28-205ENST00000526204 STX5Q13190 355 aa21.37■■□□□ 1.01
VPS28-205ENST00000526204 CEACAM7Q14002 265 aa21.37■■□□□ 1.01
VPS28-205ENST00000526204 ZNF789Q5FWF6 425 aa21.37■■□□□ 1.01
VPS28-205ENST00000526204 MS4A13Q5J8X5 152 aa21.37■■□□□ 1.01
VPS28-205ENST00000526204 NOMO2Q5JPE7 1267 aa21.37■■□□□ 1.01
VPS28-205ENST00000526204 RARS2Q5T160 578 aaKnown RBP21.37■■□□□ 1.01
VPS28-205ENST00000526204 HECTD2Q5U5R9 776 aa21.37■■□□□ 1.01
VPS28-205ENST00000526204 TFAP2DQ7Z6R9 452 aa21.37■■□□□ 1.01
VPS28-205ENST00000526204 RNF135Q8IUD6 432 aa21.37■■□□□ 1.01
VPS28-205ENST00000526204 TEX26Q8N6G2 289 aa21.37■■□□□ 1.01
VPS28-205ENST00000526204 OR13J1Q8NGT2 312 aa21.37■■□□□ 1.01
VPS28-205ENST00000526204 MARK4Q96L34 752 aa21.37■■□□□ 1.01
VPS28-205ENST00000526204 LRGUKQ96M69 825 aa21.37■■□□□ 1.01
VPS28-205ENST00000526204 TRMOQ9BU70 441 aa21.37■■□□□ 1.01
VPS28-205ENST00000526204 MFSD1Q9H3U5 465 aa21.37■■□□□ 1.01
VPS28-205ENST00000526204 MEAF6Q9HAF1 191 aa21.37■■□□□ 1.01
VPS28-205ENST00000526204 SP110Q9HB58 689 aa21.37■■□□□ 1.01
VPS28-205ENST00000526204 MRPL42Q9Y6G3 142 aaKnown RBP21.37■■□□□ 1.01
VPS28-205ENST00000526204 PTPRDP23468 1912 aa21.36■■□□□ 1.01
VPS28-205ENST00000526204 NEMP2A6NFY4 417 aa21.36■■□□□ 1.01
VPS28-205ENST00000526204 J3KR12 359 aa21.36■■□□□ 1.01
VPS28-205ENST00000526204 BCAS2O75934 225 aaPredicted RBP21.36■■□□□ 1.01
VPS28-205ENST00000526204 PENKP01210 267 aaPredicted RBP21.36■■□□□ 1.01
VPS28-205ENST00000526204 SLC10A7Q0GE19 358 aa21.36■■□□□ 1.01
VPS28-205ENST00000526204 ATP6V0D2Q8N8Y2 350 aa21.36■■□□□ 1.01
VPS28-205ENST00000526204 SPPL2BQ8TCT7 592 aa21.36■■□□□ 1.01
VPS28-205ENST00000526204 PABPC5Q96DU9 382 aaKnown RBP21.36■■□□□ 1.01
VPS28-205ENST00000526204 PACSIN3Q9UKS6 424 aa21.36■■□□□ 1.01
VPS28-205ENST00000526204 SQORQ9Y6N5 450 aa21.36■■□□□ 1.01
VPS28-205ENST00000526204 NLRC5Q86WI3 1866 aa21.36■■□□□ 1.01
VPS28-205ENST00000526204 IGLV3-10A0A075B6K4 115 aa21.35■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms