RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 TLR10Q9BXR5 811 aa14.4□□□□□ -0.1
NUP54-216ENST00000514901 FRMD8P1Q9BZ68 369 aaPredicted RBP14.4□□□□□ -0.1
NUP54-216ENST00000514901 SEPT10Q9P0V9 454 aa14.4□□□□□ -0.1
NUP54-216ENST00000514901 TRHDEQ9UKU6 1024 aa14.4□□□□□ -0.1
NUP54-216ENST00000514901 TTLL3Q9Y4R7 772 aa14.4□□□□□ -0.1
NUP54-216ENST00000514901 TRPM6Q9BX84 2022 aa14.4□□□□□ -0.1
NUP54-216ENST00000514901 CACNA1EQ15878 2313 aa14.4□□□□□ -0.11
NUP54-216ENST00000514901 ZNF292O60281 2723 aa14.39□□□□□ -0.11
NUP54-216ENST00000514901 A0A1W2PPC4 97 aa14.39□□□□□ -0.11
NUP54-216ENST00000514901 UPK3BL1B0FP48 263 aa14.39□□□□□ -0.11
NUP54-216ENST00000514901 UPK3BL2E5RIL1 263 aa14.39□□□□□ -0.11
NUP54-216ENST00000514901 AREL1O15033 823 aa14.39□□□□□ -0.11
NUP54-216ENST00000514901 LATO43561 262 aa14.39□□□□□ -0.11
NUP54-216ENST00000514901 RNGTTO60942 597 aaKnown RBP14.39□□□□□ -0.11
NUP54-216ENST00000514901 IGHV4-34P06331 123 aa14.39□□□□□ -0.11
NUP54-216ENST00000514901 RBP3P10745 1247 aa14.39□□□□□ -0.11
NUP54-216ENST00000514901 PTPN3P26045 913 aa14.39□□□□□ -0.11
NUP54-216ENST00000514901 EIF3EP60228 445 aaKnown RBP14.39□□□□□ -0.11
NUP54-216ENST00000514901 ZBTB17Q13105 803 aa14.39□□□□□ -0.11
NUP54-216ENST00000514901 CSRP2Q16527 193 aa14.39□□□□□ -0.11
NUP54-216ENST00000514901 SETMARQ53H47 684 aaPredicted RBP14.39□□□□□ -0.11
NUP54-216ENST00000514901 ZNF569Q5MCW4 686 aa14.39□□□□□ -0.11
NUP54-216ENST00000514901 ERAP2Q6P179 960 aa14.39□□□□□ -0.11
NUP54-216ENST00000514901 NDUFAF2Q8N183 169 aa14.39□□□□□ -0.11
NUP54-216ENST00000514901 CNTD1Q8N815 330 aa14.39□□□□□ -0.11
NUP54-216ENST00000514901 MAIP1Q8WWC4 291 aa14.39□□□□□ -0.11
NUP54-216ENST00000514901 HTR3CQ8WXA8 447 aa14.39□□□□□ -0.11
NUP54-216ENST00000514901 TEKT5Q96M29 485 aa14.39□□□□□ -0.11
NUP54-216ENST00000514901 AGAP3Q96P47 875 aa14.39□□□□□ -0.11
NUP54-216ENST00000514901 SLC25A51Q9H1U9 297 aa14.39□□□□□ -0.11
NUP54-216ENST00000514901 EIF2B4Q9UI10 523 aaKnown RBP14.39□□□□□ -0.11
NUP54-216ENST00000514901 PHTF1Q9UMS5 762 aa14.39□□□□□ -0.11
NUP54-216ENST00000514901 DMTF1Q9Y222 760 aa14.39□□□□□ -0.11
NUP54-216ENST00000514901 PCDHGC4Q9Y5F7 938 aa14.39□□□□□ -0.11
NUP54-216ENST00000514901 USP34Q70CQ2 3546 aa14.38□□□□□ -0.11
NUP54-216ENST00000514901 A0A1B0GTW7 788 aa14.38□□□□□ -0.11
NUP54-216ENST00000514901 A0A1W2PQU0 124 aa14.38□□□□□ -0.11
NUP54-216ENST00000514901 TTC24A2A3L6 582 aaPredicted RBP14.38□□□□□ -0.11
NUP54-216ENST00000514901 KHNYNO15037 678 aaKnown RBP14.38□□□□□ -0.11
NUP54-216ENST00000514901 BCAT2O15382 392 aaPredicted RBP14.38□□□□□ -0.11
NUP54-216ENST00000514901 STK10O94804 968 aaKnown RBP14.38□□□□□ -0.11
NUP54-216ENST00000514901 PGLSO95336 258 aa14.38□□□□□ -0.11
NUP54-216ENST00000514901 MAOBP27338 520 aa14.38□□□□□ -0.11
NUP54-216ENST00000514901 ABL2P42684 1182 aa14.38□□□□□ -0.11
NUP54-216ENST00000514901 RPL26P61254 145 aaKnown RBP14.38□□□□□ -0.11
NUP54-216ENST00000514901 DSC2Q02487 901 aa14.38□□□□□ -0.11
NUP54-216ENST00000514901 SPEM2Q0P670 501 aa14.38□□□□□ -0.11
NUP54-216ENST00000514901 SLC14A2Q15849 920 aa14.38□□□□□ -0.11
NUP54-216ENST00000514901 TMEM52BQ4KMG9 183 aa14.38□□□□□ -0.11
NUP54-216ENST00000514901 ARMC12Q5T9G4 340 aa14.38□□□□□ -0.11
NUP54-216ENST00000514901 DARS2Q6PI48 645 aaKnown RBP14.38□□□□□ -0.11
NUP54-216ENST00000514901 SLC23A3Q6PIS1 610 aa14.38□□□□□ -0.11
NUP54-216ENST00000514901 ALYREFQ86V81 257 aaKnown RBP14.38□□□□□ -0.11
NUP54-216ENST00000514901 SLC13A5Q86YT5 568 aaPredicted RBP14.38□□□□□ -0.11
NUP54-216ENST00000514901 DCLK2Q8N568 766 aa14.38□□□□□ -0.11
NUP54-216ENST00000514901 C1orf216Q8TAB5 229 aa14.38□□□□□ -0.11
NUP54-216ENST00000514901 ARRDC2Q8TBH0 407 aa14.38□□□□□ -0.11
NUP54-216ENST00000514901 ASB12Q8WXK4 309 aa14.38□□□□□ -0.11
NUP54-216ENST00000514901 PBKQ96KB5 322 aa14.38□□□□□ -0.11
NUP54-216ENST00000514901 MIR1-1HGQ9H1L0 117 aa14.38□□□□□ -0.11
NUP54-216ENST00000514901 SEMA4GQ9NTN9 838 aa14.38□□□□□ -0.11
NUP54-216ENST00000514901 TMEM74BQ9NUR3 256 aa14.38□□□□□ -0.11
NUP54-216ENST00000514901 PYCARDQ9ULZ3 195 aa14.38□□□□□ -0.11
NUP54-216ENST00000514901 RPL26L1Q9UNX3 145 aaKnown RBP14.38□□□□□ -0.11
NUP54-216ENST00000514901 RAI2Q9Y5P3 530 aa14.38□□□□□ -0.11
NUP54-216ENST00000514901 CFAP69A5D8W1 941 aa14.37□□□□□ -0.11
NUP54-216ENST00000514901 RIOK3O14730 519 aaKnown RBP14.37□□□□□ -0.11
NUP54-216ENST00000514901 GJB3O75712 270 aa14.37□□□□□ -0.11
NUP54-216ENST00000514901 TGM1P22735 817 aa14.37□□□□□ -0.11
NUP54-216ENST00000514901 RBL1P28749 1068 aa14.37□□□□□ -0.11
NUP54-216ENST00000514901 PPP2CBP62714 309 aa14.37□□□□□ -0.11
NUP54-216ENST00000514901 RACK1P63244 317 aaKnown RBP14.37□□□□□ -0.11
NUP54-216ENST00000514901 PPP2CAP67775 309 aa14.37□□□□□ -0.11
NUP54-216ENST00000514901 NIPAL4Q0D2K0 466 aa14.37□□□□□ -0.11
NUP54-216ENST00000514901 WASHC5Q12768 1159 aa14.37□□□□□ -0.11
NUP54-216ENST00000514901 TRAF2Q12933 501 aa14.37□□□□□ -0.11
NUP54-216ENST00000514901 SGCGQ13326 291 aa14.37□□□□□ -0.11
NUP54-216ENST00000514901 TEAD4Q15561 434 aa14.37□□□□□ -0.11
NUP54-216ENST00000514901 B4GALNT4Q76KP1 1039 aa14.37□□□□□ -0.11
NUP54-216ENST00000514901 PID1Q7Z2X4 250 aa14.37□□□□□ -0.11
NUP54-216ENST00000514901 CXorf40AQ8TE69 158 aa14.37□□□□□ -0.11
NUP54-216ENST00000514901 PDCD6IPQ8WUM4 868 aaKnown RBP14.37□□□□□ -0.11
NUP54-216ENST00000514901 SKA1Q96BD8 255 aa14.37□□□□□ -0.11
NUP54-216ENST00000514901 IMP4Q96G21 291 aaKnown RBP14.37□□□□□ -0.11
NUP54-216ENST00000514901 NSMCE3Q96MG7 304 aa14.37□□□□□ -0.11
NUP54-216ENST00000514901 NUSAP1Q9BXS6 441 aaKnown RBP14.37□□□□□ -0.11
NUP54-216ENST00000514901 GLOD4Q9HC38 313 aa14.37□□□□□ -0.11
NUP54-216ENST00000514901 PCDH12Q9NPG4 1184 aa14.37□□□□□ -0.11
NUP54-216ENST00000514901 KCND1Q9NSA2 647 aa14.37□□□□□ -0.11
NUP54-216ENST00000514901 KLHL8Q9P2G9 620 aaPredicted RBP14.37□□□□□ -0.11
NUP54-216ENST00000514901 SLC6A14Q9UN76 642 aa14.37□□□□□ -0.11
NUP54-216ENST00000514901 ZKSCAN5Q9Y2L8 839 aa14.37□□□□□ -0.11
NUP54-216ENST00000514901 PCDHB9Q9Y5E1 797 aa14.37□□□□□ -0.11
NUP54-216ENST00000514901 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.37□□□□□ -0.11
NUP54-216ENST00000514901 ANKRD36A6QL64 1941 aa14.37□□□□□ -0.11
NUP54-216ENST00000514901 PRAMEF26H0Y7S4 382 aa14.36□□□□□ -0.11
NUP54-216ENST00000514901 CPP00450 1065 aa14.36□□□□□ -0.11
NUP54-216ENST00000514901 SYPP08247 313 aa14.36□□□□□ -0.11
NUP54-216ENST00000514901 CD86P42081 329 aa14.36□□□□□ -0.11
NUP54-216ENST00000514901 AFF3P51826 1226 aaKnown RBP14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms