RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 PTAR1Q7Z6K3 402 aaPredicted RBP8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 PTPRN2Q92932 1015 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 TRAPPC9Q96Q05 1148 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 MIPEPQ99797 713 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 ZYG11BQ9C0D3 744 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 PAIP1Q9H074 479 aaKnown RBP8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 ATP13A1Q9HD20 1204 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 NT5MQ9NPB1 228 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 IRAK3Q9Y616 596 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 KIAA1671Q9BY89 1806 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 ZNF197O14709 1029 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 FSCN2O14926 492 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 PMPCBO75439 489 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 MYL2P10916 166 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 WASP42768 502 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 CSE1LP55060 971 aaKnown RBP8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 MLLT6P55198 1093 aaPredicted RBP8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 SLC25A3Q00325 362 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 LY6G5CQ5SRR4 150 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 BBS12Q6ZW61 710 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 TMEM25Q86YD3 366 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 ARHGAP24Q8N264 748 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 ATL2Q8NHH9 583 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 GIPC3Q8TF64 312 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 TFB1MQ8WVM0 346 aaKnown RBP8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 CENPIQ92674 756 aaPredicted RBP8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 USP13Q92995 863 aaPredicted RBP8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 ZNF707Q96C28 371 aaPredicted RBP8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 HMCESQ96FZ2 354 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 OLFM3Q96PB7 478 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 SLC39A8Q9C0K1 460 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 TASP1Q9H6P5 420 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 PPM1HQ9ULR3 514 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 SPTBN5Q9NRC6 3674 aaKnown RBP8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 FAM237BA0A1B0GVD1 139 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 CAPN8A6NHC0 703 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 APOC4-APOC2K7ER74 178 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 LIASO43766 372 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 SNAP91O60641 907 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 APOC2P02655 101 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 CHRNA3P32297 505 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 SCNN1AP37088 669 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 RPL34P49207 117 aaKnown RBP8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 TFF2Q03403 129 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 DLG1Q12959 904 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 BBS9Q3SYG4 887 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 RINLQ6ZS11 566 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 RIPOR1Q6ZS17 1223 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 RAPH1Q70E73 1250 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 TMC8Q8IU68 726 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 RBM12BQ8IXT5 1001 aaKnown RBP8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 SORCS1Q8WY21 1168 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 ZNF670Q9BS34 389 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 TTLL2Q9BWV7 592 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 CAAP1Q9H8G2 361 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 MAD1L1Q9Y6D9 718 aa8.77□□□□□ -1.01
LIMCH1-209ENST00000509277 NOTCH4Q99466 2003 aa8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 A0A0J9YVX5 310 aa8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 A8MX80 341 aa8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 J3KR12 359 aa8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 EFEMP2O95967 443 aa8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 OAS1P00973 400 aaKnown RBP8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 LMNAP02545 664 aaKnown RBP8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 ASGR2P07307 311 aa8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 MTTPP55157 894 aa8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 WDR4P57081 412 aaKnown RBP8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 PDK1Q15118 436 aa8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 CNGA3Q16281 694 aa8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 IZUMO3Q5VZ72 239 aa8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 OTOAQ7RTW8 1153 aa8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 FBXO27Q8NI29 283 aa8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 CATSPER2Q96P56 530 aa8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 CDK5RAP1Q96SZ6 601 aaKnown RBP8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 RPP25Q9BUL9 199 aaKnown RBP8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 DUS2Q9NX74 493 aaKnown RBP8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 GTSE1Q9NYZ3 720 aa8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 IPO11Q9UI26 975 aaKnown RBP8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 ARHGAP26Q9UNA1 814 aa8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 SH3GLB1Q9Y371 365 aa8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 C3orf70A6NLC5 250 aaPredicted RBP8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 A8MU76 341 aa8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 RNF103O00237 685 aa8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 PEX2P28328 305 aa8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 MZF1P28698 734 aaPredicted RBP8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 AQP4P55087 323 aa8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 SESN2P58004 480 aaPredicted RBP8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 TMPRSS15P98073 1019 aa8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 SEMG2Q02383 582 aa8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 CCDC15Q0P6D6 951 aa8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 SLC1A5Q15758 541 aa8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 ADGRF1Q5T601 910 aa8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 CGB2Q6NT52 195 aa8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 SYCE2Q6PIF2 218 aa8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 ZDHHC24Q6UX98 284 aa8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 RASGEF1CQ8N431 466 aa8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 DNAAF3Q8N9W5 541 aa8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 TTC13Q8NBP0 860 aa8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 ZFAND2BQ8WV99 257 aa8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 SLC7A6OSQ96CW6 309 aaPredicted RBP8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 NSL1Q96IY1 281 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms