RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 RBFAQ8N0V3 343 aa4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 ZCCHC9Q8N567 271 aaKnown RBP4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 GJC3Q8NFK1 279 aa4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 DENND1AQ8TEH3 1009 aa4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 SLC35F5Q8WV83 523 aa4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 PSPC1Q8WXF1 523 aaKnown RBP4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 ARHGEF2Q92974 986 aaKnown RBP4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 TMEM18Q96B42 140 aa4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 OTULINQ96BN8 352 aa4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 MXRA8Q9BRK3 442 aa4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 STRA6Q9BX79 667 aa4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 GHITMQ9H3K2 345 aa4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 PLEKHA4Q9H4M7 779 aa4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 FBRSL1Q9HCM7 1045 aaKnown RBP4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 ASAH2Q9NR71 780 aa4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 ANKRD10Q9NXR5 420 aa4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 ZNF70Q9UC06 446 aaPredicted RBP4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 SLCO3A1Q9UIG8 710 aa4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 CORO1CQ9ULV4 474 aaPredicted RBP4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 LSM4Q9Y4Z0 139 aaKnown RBP4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 KAT6AQ92794 2004 aa4.24□□□□□ -1.73
HMGB1P28-201ENST00000507778 POLR2AP24928 1970 aaKnown RBP4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 TMEM272A0A1B0GTI8 110 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 A0A1W2PRG0 241 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 A6NCN8 305 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 K7ENM7 598 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 IFNL4K9M1U5 179 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 CHL1O00533 1208 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 PAGE4O60829 102 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 MTA2O94776 668 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 EPN2O95208 641 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 MLYCDO95822 493 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 PRF1P14222 555 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 ALOX12P18054 663 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 CDH2P19022 906 aaPredicted RBP4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 CDAP32320 146 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 PIP4K2AP48426 406 aaPredicted RBP4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 CXCR3P49682 368 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 RASSF2P50749 326 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 FAM27E3Q08E93 113 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 ITGADQ13349 1161 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 ARHGEF6Q15052 776 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 RABEP1Q15276 862 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 MEA1Q16626 185 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 SOWAHAQ2M3V2 549 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 TCTN1Q2MV58 587 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 WASHC2DQ5SRD0 308 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 PRAMEF19Q5SWL8 479 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 ZKSCAN2Q63HK3 967 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 NUGGCQ68CJ6 796 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 LRRC8EQ6NSJ5 796 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 DPY19L2P1Q6NXN4 242 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 NCEH1Q6PIU2 408 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 TSSK4Q6SA08 328 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 PARM1Q6UWI2 310 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 BRINP3Q76B58 766 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 MRPL10Q7Z7H8 261 aaKnown RBP4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 PIP4P1Q86T03 277 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 MMP21Q8N119 569 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 TTC39CQ8N584 583 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 TEX45Q8NA69 505 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 ENGASEQ8NFI3 743 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 POMGNT1Q8WZA1 660 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 INPP5DQ92835 1189 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 RPL36ALQ969Q0 106 aaKnown RBP4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 PABPC5Q96DU9 382 aaKnown RBP4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 GFM1Q96RP9 751 aaKnown RBP4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 TMEM79Q9BSE2 394 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 POLDIP3Q9BY77 421 aaKnown RBP4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 NPFFR1Q9GZQ6 430 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 ISCUQ9H1K1 167 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 SYNCQ9H7C4 482 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 SCPEP1Q9HB40 452 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 BPIFA1Q9NP55 256 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 SMYD2Q9NRG4 433 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 SLC6A13Q9NSD5 602 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 HAUS2Q9NVX0 235 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 DLGAP2Q9P1A6 1054 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 GPR34Q9UPC5 381 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 AAR2Q9Y312 384 aaKnown RBP4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 A3GALT2U3KPV4 340 aa4.23□□□□□ -1.73
HMGB1P28-201ENST00000507778 IGLV5-39A0A0G2JS06 123 aa4.22□□□□□ -1.73
HMGB1P28-201ENST00000507778 DYTNA2CJ06 578 aa4.22□□□□□ -1.73
HMGB1P28-201ENST00000507778 WDR91A4D1P6 747 aa4.22□□□□□ -1.73
HMGB1P28-201ENST00000507778 MYO1GB0I1T2 1018 aa4.22□□□□□ -1.73
HMGB1P28-201ENST00000507778 PTGES3LE9PB15 166 aa4.22□□□□□ -1.73
HMGB1P28-201ENST00000507778 CBSLP0DN79 551 aa4.22□□□□□ -1.73
HMGB1P28-201ENST00000507778 RARGP13631 454 aa4.22□□□□□ -1.73
HMGB1P28-201ENST00000507778 KRT10P13645 584 aa4.22□□□□□ -1.73
HMGB1P28-201ENST00000507778 ITGAXP20702 1163 aa4.22□□□□□ -1.73
HMGB1P28-201ENST00000507778 DCTDP32321 178 aa4.22□□□□□ -1.73
HMGB1P28-201ENST00000507778 HOXD13P35453 343 aa4.22□□□□□ -1.73
HMGB1P28-201ENST00000507778 CBSP35520 551 aa4.22□□□□□ -1.73
HMGB1P28-201ENST00000507778 PPARGP37231 505 aaPredicted RBP4.22□□□□□ -1.73
HMGB1P28-201ENST00000507778 PRAMEP78395 509 aa4.22□□□□□ -1.73
HMGB1P28-201ENST00000507778 CSTF3Q12996 717 aaKnown RBP4.22□□□□□ -1.73
HMGB1P28-201ENST00000507778 GRIK3Q13003 919 aa4.22□□□□□ -1.73
HMGB1P28-201ENST00000507778 OLIG2Q13516 323 aa4.22□□□□□ -1.73
HMGB1P28-201ENST00000507778 FGFBP1Q14512 234 aa4.22□□□□□ -1.73
HMGB1P28-201ENST00000507778 DUSP6Q16828 381 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms