RNA–Protein interactions for RNA: ENST00000504203.5

MATR3-233, Transcript of matrin 3, human

TSL 2 BASIC

Gene MATR3, Length 2,243 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MATR3-233	ENST00000504203	TLR8	Q9NR97	1041 aa	Known RBP	13.14	□□□□□ -0.31
MATR3-233	ENST00000504203	PPM1H	Q9ULR3	514 aa		13.14	□□□□□ -0.31
MATR3-233	ENST00000504203	LRCH1	Q9Y2L9	728 aa		13.14	□□□□□ -0.31
MATR3-233	ENST00000504203	TTC24	A2A3L6	582 aa	Predicted RBP	13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	MTMR11	A4FU01	709 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	RGSL1	A5PLK6	1076 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	NEMP1	O14524	444 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	SMNDC1	O75940	238 aa	Known RBP eCLIP	13.13	□□□□□ -0.31	9e-8	■■■■□ 20.7
MATR3-233	ENST00000504203	PDE5A	O76074	875 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	SNUPN	O95149	360 aa	Known RBP	13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	WISP3	O95389	354 aa	Predicted RBP	13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	ATXN1L	P0C7T5	689 aa	Known RBP	13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	THRA	P10827	490 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	FGFR3	P22607	806 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	ATP5F1	P24539	256 aa	Predicted RBP	13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	ADSL	P30566	484 aa	Predicted RBP	13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	SERPINB5	P36952	375 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	EPHB1	P54762	984 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	SLC12A2	P55011	1212 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	RING1	Q06587	406 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	CCNI	Q14094	377 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	PARP15	Q460N3	678 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	SIRPB2	Q5JXA9	342 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	RSPO2	Q6UXX9	243 aa	Predicted RBP	13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	ACAD11	Q709F0	780 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	PIWIL4	Q7Z3Z4	852 aa	Known RBP	13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	LMNTD2	Q8IXW0	634 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	MYEOV	Q96EZ4	313 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	MAEL	Q96JY0	434 aa	Known RBP	13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	SPATA17	Q96L03	361 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	UBXN10	Q96LJ8	280 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	S100A14	Q9HCY8	104 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	MARCH5	Q9NX47	278 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	NCKIPSD	Q9NZQ3	722 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	UXT	Q9UBK9	157 aa	Predicted RBP	13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	ABT1	Q9ULW3	272 aa	Known RBP	13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	POMP	Q9Y244	141 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	SLC27A5	Q9Y2P5	690 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	SLC12A8	A0AV02	714 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	MAP3K7	O43318	606 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	LDB2	O43679	373 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	TBC1D4	O60343	1298 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	RAMP2	O60895	175 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	ZDHHC11B	P0C7U3	371 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	ARSD	P51689	593 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	MTTP	P55157	894 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	PFKP	Q01813	784 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	TBL3	Q12788	808 aa	Known RBP	13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	GPR17	Q13304	367 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	CSHL1	Q14406	222 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	POLD3	Q15054	466 aa	Predicted RBP	13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	C10orf120	Q5SQS8	335 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	ACBD5	Q5T8D3	534 aa	Predicted RBP	13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	TRIM67	Q6ZTA4	783 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	CIR1	Q86X95	450 aa	Predicted RBP	13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	SPNS2	Q8IVW8	549 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	FBXW8	Q8N3Y1	598 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	CCNYL1	Q8N7R7	359 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	PNPLA1	Q8N8W4	532 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	PPP1R36	Q96LQ0	422 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	ZNF184	Q99676	751 aa	Predicted RBP	13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	MFSD1	Q9H3U5	465 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	POMK	Q9H5K3	350 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	ELAC1	Q9H777	363 aa	Known RBP	13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	NDE1	Q9NXR1	346 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	CDYL	Q9Y232	598 aa		13.13	□□□□□ -0.31
MATR3-233	ENST00000504203	NEMP2	A6NFY4	417 aa		13.12	□□□□□ -0.31
MATR3-233	ENST00000504203		A6NHS1	94 aa		13.12	□□□□□ -0.31
MATR3-233	ENST00000504203	LTA4H	P09960	611 aa	Known RBP	13.12	□□□□□ -0.31
MATR3-233	ENST00000504203	KCNA5	P22460	613 aa		13.12	□□□□□ -0.31
MATR3-233	ENST00000504203	PPARG	P37231	505 aa	Predicted RBP	13.12	□□□□□ -0.31
MATR3-233	ENST00000504203	YBEY	P58557	167 aa	Predicted RBP	13.12	□□□□□ -0.31
MATR3-233	ENST00000504203	SP3	Q02447	781 aa		13.12	□□□□□ -0.31
MATR3-233	ENST00000504203	ZRSR2	Q15696	482 aa	Known RBP	13.12	□□□□□ -0.31
MATR3-233	ENST00000504203	FAM83E	Q2M2I3	478 aa		13.12	□□□□□ -0.31
MATR3-233	ENST00000504203	HECTD2	Q5U5R9	776 aa		13.12	□□□□□ -0.31
MATR3-233	ENST00000504203	NADSYN1	Q6IA69	706 aa		13.12	□□□□□ -0.31
MATR3-233	ENST00000504203	RNF111	Q6ZNA4	994 aa		13.12	□□□□□ -0.31
MATR3-233	ENST00000504203	HPS6	Q86YV9	775 aa		13.12	□□□□□ -0.31
MATR3-233	ENST00000504203	RP9	Q8TA86	221 aa	Known RBP	13.12	□□□□□ -0.31
MATR3-233	ENST00000504203	GABPB2	Q8TAK5	448 aa	Predicted RBP	13.12	□□□□□ -0.31
MATR3-233	ENST00000504203	SPPL2B	Q8TCT7	592 aa		13.12	□□□□□ -0.31
MATR3-233	ENST00000504203	SGF29	Q96ES7	293 aa		13.12	□□□□□ -0.31
MATR3-233	ENST00000504203	HHIPL1	Q96JK4	782 aa		13.12	□□□□□ -0.31
MATR3-233	ENST00000504203	RPRD1A	Q96P16	312 aa	Predicted RBP	13.12	□□□□□ -0.31
MATR3-233	ENST00000504203	CASD1	Q96PB1	797 aa		13.12	□□□□□ -0.31
MATR3-233	ENST00000504203	TTC1	Q99614	292 aa		13.12	□□□□□ -0.31
MATR3-233	ENST00000504203	TSEN34	Q9BSV6	310 aa	Known RBP	13.12	□□□□□ -0.31
MATR3-233	ENST00000504203	COMMD8	Q9NX08	183 aa		13.12	□□□□□ -0.31
MATR3-233	ENST00000504203	CHD5	Q8TDI0	1954 aa		13.12	□□□□□ -0.31
MATR3-233	ENST00000504203	BUD23	O43709	281 aa	Known RBP	13.12	□□□□□ -0.31
MATR3-233	ENST00000504203	PRAMEF11	O60813	436 aa		13.12	□□□□□ -0.31
MATR3-233	ENST00000504203	S1PR4	O95977	384 aa		13.12	□□□□□ -0.31
MATR3-233	ENST00000504203	HMBS	P08397	361 aa		13.12	□□□□□ -0.31
MATR3-233	ENST00000504203	ACVRL1	P37023	503 aa		13.12	□□□□□ -0.31
MATR3-233	ENST00000504203	PBX3	P40426	434 aa		13.12	□□□□□ -0.31
MATR3-233	ENST00000504203	MAPKAPK2	P49137	400 aa		13.12	□□□□□ -0.31
MATR3-233	ENST00000504203	ARPP19	P56211	112 aa		13.12	□□□□□ -0.31
MATR3-233	ENST00000504203	ACVR1	Q04771	509 aa		13.12	□□□□□ -0.31
MATR3-233	ENST00000504203	LBR	Q14739	615 aa	Known RBP	13.12	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms