RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 OPTCQ9UBM4 332 aa10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 BBIP1A8MTZ0 92 aa10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 CKBP12277 381 aa10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 HNRNPLP14866 589 aaKnown RBP eCLIP10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 CDC25CP30307 473 aa10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 SLC18A2Q05940 514 aa10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 FSTL1Q12841 308 aa10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 PDK3Q15120 406 aa10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 MSS51Q4VC12 460 aa10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 PABPC1LQ4VXU2 614 aaKnown RBP10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 SDHAF4Q5VUM1 108 aa10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 LYPLAL1Q5VWZ2 237 aa10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 DEFB128Q7Z7B8 93 aa10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 LPIN3Q9BQK8 851 aa10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 hCG_2014768A0A024R1R8 64 aa10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 IPO13O94829 963 aaKnown RBP10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 ITGB6P18564 788 aa10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 TYMPP19971 482 aa10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 HALP42357 657 aa10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 IDH3AP50213 366 aa10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 NDST2P52849 883 aa10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 DMC1Q14565 340 aa10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 ZNF792Q3KQV3 632 aa10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 HECTD2Q5U5R9 776 aa10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 SPPL2BQ8TCT7 592 aa10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 OTUB1Q96FW1 271 aaPredicted RBP10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 TEKT5Q96M29 485 aa10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 SLC25A51Q9H1U9 297 aa10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 SEMA6AQ9H2E6 1030 aa10.84□□□□□ -0.67
LIMCH1-205ENST00000503057 MYBPHLA2RUH7 354 aa10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 AZIN1O14977 448 aa10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 KCNE1P15382 129 aa10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 ADSLP30566 484 aaPredicted RBP10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 GALNT3Q14435 633 aa10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 DENND1CQ8IV53 801 aa10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 P3H2Q8IVL5 708 aa10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 MPP5Q8N3R9 675 aa10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 YME1L1Q96TA2 773 aa10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 C2orf49Q9BVC5 232 aaPredicted RBP10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 OXCT2Q9BYC2 517 aaPredicted RBP10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 TMEM216Q9P0N5 145 aa10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 ADAMTS5Q9UNA0 930 aa10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 PLA2G4CQ9UP65 541 aa10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 RREB1Q92766 1687 aa10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 YJEFN3A6XGL0 299 aa10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 TLR5O60602 858 aa10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 SEC22BO75396 215 aa10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 RPP40O75818 363 aaKnown RBP10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 LPOP22079 712 aaPredicted RBP10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 NMBRP28336 390 aa10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 SERPINA4P29622 427 aa10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 SOAT1P35610 550 aa10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 RTL3Q8N8U3 475 aaKnown RBP10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 FIG4Q92562 907 aa10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 SEPHS2Q99611 448 aa10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 LEF1Q9UJU2 399 aaPredicted RBP10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 TNRC6CQ9HCJ0 1690 aaKnown RBP10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 UGT1A9O60656 530 aa10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 IDO1P14902 403 aa10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 MSH3P20585 1137 aa10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 CAMK1DQ8IU85 385 aa10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 PTCD3Q96EY7 689 aaKnown RBP10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 KLHL5Q96PQ7 755 aa10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 PEBP4Q96S96 227 aa10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 MRPS26Q9BYN8 205 aaKnown RBP10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 UGT1A7Q9HAW7 530 aa10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 UGT1A10Q9HAW8 530 aa10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 UGT1A8Q9HAW9 530 aa10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 ANAPC2Q9UJX6 822 aa10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 DYRK1BQ9Y463 629 aa10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 TRAF6Q9Y4K3 522 aa10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 DYTNA2CJ06 578 aa10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 TTLL13PA6NNM8 815 aa10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 BUD23O43709 281 aaKnown RBP10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 PQBP1O60828 265 aaKnown RBP10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 KCNH1O95259 989 aa10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 RANBP1P43487 201 aa10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 RAD23AP54725 363 aa10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 DDX39BQ13838 428 aaKnown RBP10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 RRM2BQ7LG56 351 aa10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 METTL3Q86U44 580 aaKnown RBP10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 AADATQ8N5Z0 425 aa10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 NXNL1Q96CM4 212 aa10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 SPASTQ9UBP0 616 aa10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 AGO1Q9UL18 857 aaKnown RBP10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 SLC27A5Q9Y2P5 690 aa10.83□□□□□ -0.68
LIMCH1-205ENST00000503057 M0R3G1 203 aa10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 SLC22A2O15244 555 aa10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 CYP2A6P11509 494 aaPredicted RBP10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 PRKAR2AP13861 404 aaKnown RBP10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 CCT8P50990 548 aa10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 USP45Q70EL2 814 aa10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 OR52K2Q8NGK3 314 aa10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 PIF1Q9H611 641 aa10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 GMIPQ9P107 970 aa10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 Q9Y3F1 56 aa10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 ZNF839A8K0R7 811 aa10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 PRKCHP24723 683 aa10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 PRIM2P49643 509 aa10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 TRAF2Q12933 501 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms