RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 ISG20Q96AZ6 181 aaKnown RBP16.66■□□□□ 0.26
VIM-208ENST00000497849 KLHL32Q96NJ5 620 aa16.66■□□□□ 0.26
VIM-208ENST00000497849 RBM15Q96T37 977 aaKnown RBP eCLIP16.66■□□□□ 0.26
VIM-208ENST00000497849 TSG101Q99816 390 aa16.66■□□□□ 0.26
VIM-208ENST00000497849 CDH19Q9H159 772 aa16.66■□□□□ 0.26
VIM-208ENST00000497849 RDH14Q9HBH5 336 aa16.66■□□□□ 0.26
VIM-208ENST00000497849 LRIT1Q9P2V4 623 aa16.66■□□□□ 0.26
VIM-208ENST00000497849 ANKRD36A6QL64 1941 aa16.66■□□□□ 0.26
VIM-208ENST00000497849 KRIT1O00522 736 aa16.65■□□□□ 0.26
VIM-208ENST00000497849 MTSS1O43312 755 aa16.65■□□□□ 0.26
VIM-208ENST00000497849 THAP12O43422 761 aa16.65■□□□□ 0.26
VIM-208ENST00000497849 ZNF202O95125 648 aa16.65■□□□□ 0.26
VIM-208ENST00000497849 FGF3P11487 239 aaPredicted RBP16.65■□□□□ 0.26
VIM-208ENST00000497849 GNA15P30679 374 aa16.65■□□□□ 0.26
VIM-208ENST00000497849 B4GALNT1Q00973 533 aa16.65■□□□□ 0.26
VIM-208ENST00000497849 HLTFQ14527 1009 aaKnown RBP eCLIP16.65■□□□□ 0.26
VIM-208ENST00000497849 NFATC4Q14934 902 aa16.65■□□□□ 0.26
VIM-208ENST00000497849 BRMS1LQ5PSV4 323 aa16.65■□□□□ 0.26
VIM-208ENST00000497849 LRRC31Q6UY01 552 aa16.65■□□□□ 0.26
VIM-208ENST00000497849 TTC7BQ86TV6 843 aa16.65■□□□□ 0.26
VIM-208ENST00000497849 IL22RA1Q8N6P7 574 aa16.65■□□□□ 0.26
VIM-208ENST00000497849 GPBAR1Q8TDU6 330 aa16.65■□□□□ 0.26
VIM-208ENST00000497849 CXorf40AQ8TE69 158 aa16.65■□□□□ 0.26
VIM-208ENST00000497849 PDXPQ96GD0 296 aa16.65■□□□□ 0.26
VIM-208ENST00000497849 C1orf74Q96LT6 269 aa16.65■□□□□ 0.26
VIM-208ENST00000497849 CATSPER2Q96P56 530 aa16.65■□□□□ 0.26
VIM-208ENST00000497849 NPY6RQ99463 290 aa16.65■□□□□ 0.26
VIM-208ENST00000497849 C1QTNF7Q9BXJ2 289 aa16.65■□□□□ 0.26
VIM-208ENST00000497849 PCDHGA3Q9Y5H0 932 aa16.65■□□□□ 0.26
VIM-208ENST00000497849 TMEM110-MUSTN1A8MSY1 372 aa16.64■□□□□ 0.25
VIM-208ENST00000497849 P4HA2O15460 535 aa16.64■□□□□ 0.25
VIM-208ENST00000497849 NKX2-8O15522 239 aa16.64■□□□□ 0.25
VIM-208ENST00000497849 B4GAT1O43505 415 aa16.64■□□□□ 0.25
VIM-208ENST00000497849 GNA12Q03113 381 aa16.64■□□□□ 0.25
VIM-208ENST00000497849 WSCD2Q2TBF2 565 aa16.64■□□□□ 0.25
VIM-208ENST00000497849 C14orf28Q4W4Y0 310 aa16.64■□□□□ 0.25
VIM-208ENST00000497849 COBLL1Q53SF7 1204 aa16.64■□□□□ 0.25
VIM-208ENST00000497849 C11orf57Q6ZUT1 292 aaPredicted RBP16.64■□□□□ 0.25
VIM-208ENST00000497849 SLC26A9Q7LBE3 791 aa16.64■□□□□ 0.25
VIM-208ENST00000497849 FMR1NBQ8N0W7 255 aaPredicted RBP16.64■□□□□ 0.25
VIM-208ENST00000497849 RCBTB1Q8NDN9 531 aa16.64■□□□□ 0.25
VIM-208ENST00000497849 OR2AP1Q8NGE2 309 aa16.64■□□□□ 0.25
VIM-208ENST00000497849 ABHD17AQ96GS6 310 aa16.64■□□□□ 0.25
VIM-208ENST00000497849 TAAR9Q96RI9 348 aa16.64■□□□□ 0.25
VIM-208ENST00000497849 WRAP53Q9BUR4 548 aaKnown RBP16.64■□□□□ 0.25
VIM-208ENST00000497849 APOOQ9BUR5 198 aa16.64■□□□□ 0.25
VIM-208ENST00000497849 GTPBP4Q9BZE4 634 aaKnown RBP16.64■□□□□ 0.25
VIM-208ENST00000497849 KLQ9UEF7 1012 aa16.64■□□□□ 0.25
VIM-208ENST00000497849 COQ6Q9Y2Z9 468 aa16.64■□□□□ 0.25
VIM-208ENST00000497849 DAAM1Q9Y4D1 1078 aa16.64■□□□□ 0.25
VIM-208ENST00000497849 OR1A2Q9Y585 309 aa16.64■□□□□ 0.25
VIM-208ENST00000497849 RP1L1Q8IWN7 2480 aaPredicted RBP16.63■□□□□ 0.25
VIM-208ENST00000497849 ZNF891A8MT65 544 aaPredicted RBP16.63■□□□□ 0.25
VIM-208ENST00000497849 NUDT21O43809 227 aaKnown RBP16.63■□□□□ 0.25
VIM-208ENST00000497849 SRGAP2O75044 1071 aa16.63■□□□□ 0.25
VIM-208ENST00000497849 CPNE6O95741 557 aa16.63■□□□□ 0.25
VIM-208ENST00000497849 GSRP00390 522 aa16.63■□□□□ 0.25
VIM-208ENST00000497849 ERBB2P04626 1255 aa16.63■□□□□ 0.25
VIM-208ENST00000497849 HTR1BP28222 390 aa16.63■□□□□ 0.25
VIM-208ENST00000497849 ACVRL1P37023 503 aa16.63■□□□□ 0.25
VIM-208ENST00000497849 UBE2HP62256 183 aa16.63■□□□□ 0.25
VIM-208ENST00000497849 SLC6A3Q01959 620 aa16.63■□□□□ 0.25
VIM-208ENST00000497849 LRRC63Q05C16 580 aa16.63■□□□□ 0.25
VIM-208ENST00000497849 CETN1Q12798 172 aa16.63■□□□□ 0.25
VIM-208ENST00000497849 ARHGEF7Q14155 803 aa16.63■□□□□ 0.25
VIM-208ENST00000497849 INPP5AQ14642 412 aa16.63■□□□□ 0.25
VIM-208ENST00000497849 LRRC14Q15048 493 aa16.63■□□□□ 0.25
VIM-208ENST00000497849 ARHGAP44Q17R89 818 aa16.63■□□□□ 0.25
VIM-208ENST00000497849 MYLK3Q32MK0 819 aa16.63■□□□□ 0.25
VIM-208ENST00000497849 MAP9Q49MG5 647 aa16.63■□□□□ 0.25
VIM-208ENST00000497849 PIM3Q86V86 326 aa16.63■□□□□ 0.25
VIM-208ENST00000497849 FAM46DQ8NEK8 389 aa16.63■□□□□ 0.25
VIM-208ENST00000497849 ARHGEF2Q92974 986 aaKnown RBP16.63■□□□□ 0.25
VIM-208ENST00000497849 NT5C3BQ969T7 300 aa16.63■□□□□ 0.25
VIM-208ENST00000497849 OSBPL1AQ9BXW6 950 aa16.63■□□□□ 0.25
VIM-208ENST00000497849 AKAP7Q9P0M2 348 aaPredicted RBP16.63■□□□□ 0.25
VIM-208ENST00000497849 B3GALT1Q9Y5Z6 326 aa16.63■□□□□ 0.25
VIM-208ENST00000497849 DGKBQ9Y6T7 804 aa16.63■□□□□ 0.25
VIM-208ENST00000497849 LRBAP50851 2863 aa16.63■□□□□ 0.25
VIM-208ENST00000497849 CXorf51AA0A1B0GTR3 108 aa16.62■□□□□ 0.25
VIM-208ENST00000497849 HGSO14964 777 aaPredicted RBP16.62■□□□□ 0.25
VIM-208ENST00000497849 DUX1O43812 170 aa16.62■□□□□ 0.25
VIM-208ENST00000497849 POP4O95707 220 aaKnown RBP16.62■□□□□ 0.25
VIM-208ENST00000497849 TNFP01375 233 aa16.62■□□□□ 0.25
VIM-208ENST00000497849 TIMP2P16035 220 aa16.62■□□□□ 0.25
VIM-208ENST00000497849 NFKBIBQ15653 356 aa16.62■□□□□ 0.25
VIM-208ENST00000497849 ZNF658Q5TYW1 1059 aaPredicted RBP16.62■□□□□ 0.25
VIM-208ENST00000497849 GDPD4Q6W3E5 623 aa16.62■□□□□ 0.25
VIM-208ENST00000497849 TAF8Q7Z7C8 310 aa16.62■□□□□ 0.25
VIM-208ENST00000497849 ATCAYQ86WG3 371 aa16.62■□□□□ 0.25
VIM-208ENST00000497849 PASD1Q8IV76 773 aa16.62■□□□□ 0.25
VIM-208ENST00000497849 DRC7Q8IY82 874 aa16.62■□□□□ 0.25
VIM-208ENST00000497849 CACNA2D3Q8IZS8 1091 aa16.62■□□□□ 0.25
VIM-208ENST00000497849 ZNF397Q8NF99 534 aaPredicted RBP16.62■□□□□ 0.25
VIM-208ENST00000497849 PGAP3Q96FM1 320 aaPredicted RBP16.62■□□□□ 0.25
VIM-208ENST00000497849 SLC45A3Q96JT2 553 aa16.62■□□□□ 0.25
VIM-208ENST00000497849 WDR92Q96MX6 357 aa16.62■□□□□ 0.25
VIM-208ENST00000497849 NUDT22Q9BRQ3 303 aa16.62■□□□□ 0.25
VIM-208ENST00000497849 IGHV5-10-1A0A0J9YXX1 117 aa16.61■□□□□ 0.25
VIM-208ENST00000497849 BECN2A8MW95 431 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms