RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 ZDHHC6Q9H6R6 413 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 CERS4Q9HA82 394 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 SMYD2Q9NRG4 433 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 ABCB8Q9NUT2 735 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 J3KR12 359 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 AGPSO00116 658 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 LILRB3O75022 631 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 AVILO75366 819 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 EPCAMP16422 314 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 ACVRL1P37023 503 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 ECT2LQ008S8 904 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 PLEKHG6Q3KR16 790 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 PITRM1Q5JRX3 1037 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 AFMIDQ63HM1 303 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 EFL1Q7Z2Z2 1120 aaKnown RBP8.44□□□□□ -1.06
USP54-215ENST00000497106 SLC22A9Q8IVM8 553 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 BBS7Q8IWZ6 715 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 ING5Q8WYH8 240 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 SIGLEC10Q96LC7 697 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 PWWP2AQ96N64 755 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 FEM1AQ9BSK4 669 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 CDH19Q9H159 772 aa8.44□□□□□ -1.06
USP54-215ENST00000497106 TBC1D3BA6NDS4 549 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 SYCE1LA8MT33 242 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 FAM107AO95990 144 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 CHEK2O96017 543 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 IRAK1P51617 712 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 ELP6Q0PNE2 266 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 MTM1Q13496 603 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 CERCAMQ5T4B2 595 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 ARHGAP24Q8N264 748 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 OR2AP1Q8NGE2 309 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 PANX3Q96QZ0 392 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 MGME1Q9BQP7 344 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 NMRAL1Q9HBL8 299 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 TAS2R13Q9NYV9 303 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 HECAQ9UBI9 543 aaPredicted RBP8.43□□□□□ -1.06
USP54-215ENST00000497106 STOML2Q9UJZ1 356 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 TCRBV7S3A2A0A539 114 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 ITGA2BP08514 1039 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 TCF3P15923 654 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 ITGB8P26012 769 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 LIMK2P53671 638 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 STX3Q13277 289 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 SLC1A5Q15758 541 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 ISG20Q96AZ6 181 aaKnown RBP8.43□□□□□ -1.06
USP54-215ENST00000497106 CYP2S1Q96SQ9 504 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 MANSC1Q9H8J5 431 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 FAM53CQ9NYF3 392 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 APOBEC2Q9Y235 224 aaKnown RBP8.43□□□□□ -1.06
USP54-215ENST00000497106 ANGPTL3Q9Y5C1 460 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 PCDHB1Q9Y5F3 818 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 FAM95CA0A1B0GW59 222 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 HIDE1A8MVS5 230 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 H0YGN5 161 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 PER2O15055 1255 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 BIRC5O15392 142 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 BANF1O75531 89 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 ERVK-10P10266 1014 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 PYGBP11216 843 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 SUOXP51687 545 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 SHHQ15465 462 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 MBLAC2Q68D91 279 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 TTC19Q6DKK2 380 aaPredicted RBP8.43□□□□□ -1.06
USP54-215ENST00000497106 BRAT1Q6PJG6 821 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 CAND1Q86VP6 1230 aaKnown RBP8.43□□□□□ -1.06
USP54-215ENST00000497106 ARID3BQ8IVW6 561 aaPredicted RBP8.43□□□□□ -1.06
USP54-215ENST00000497106 OR4L1Q8NH43 312 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 SPATA22Q8NHS9 363 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 SPOCK2Q92563 424 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 FAR2Q96K12 515 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 ZNF641Q96N77 438 aaPredicted RBP8.43□□□□□ -1.06
USP54-215ENST00000497106 RBBP8Q99708 897 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 C1QTNF7Q9BXJ2 289 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 MFSD1Q9H3U5 465 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 INTS10Q9NVR2 710 aaKnown RBP8.43□□□□□ -1.06
USP54-215ENST00000497106 FBXO5Q9UKT4 447 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 FNDC3AQ9Y2H6 1198 aaKnown RBP8.43□□□□□ -1.06
USP54-215ENST00000497106 NFS1Q9Y697 457 aa8.43□□□□□ -1.06
USP54-215ENST00000497106 KPNA5O15131 536 aa8.42□□□□□ -1.06
USP54-215ENST00000497106 EPHA5P54756 1037 aa8.42□□□□□ -1.06
USP54-215ENST00000497106 FASTKD3Q14CZ7 662 aaKnown RBP8.42□□□□□ -1.06
USP54-215ENST00000497106 ZKSCAN8Q15776 578 aaPredicted RBP8.42□□□□□ -1.06
USP54-215ENST00000497106 FAM133BQ5BKY9 247 aaKnown RBP8.42□□□□□ -1.06
USP54-215ENST00000497106 PTAR1Q7Z6K3 402 aaPredicted RBP8.42□□□□□ -1.06
USP54-215ENST00000497106 TEX26Q8N6G2 289 aa8.42□□□□□ -1.06
USP54-215ENST00000497106 LRRN4Q8WUT4 740 aa8.42□□□□□ -1.06
USP54-215ENST00000497106 RILPQ96NA2 401 aa8.42□□□□□ -1.06
USP54-215ENST00000497106 GNPTGQ9UJJ9 305 aa8.42□□□□□ -1.06
USP54-215ENST00000497106 STK38LQ9Y2H1 464 aa8.42□□□□□ -1.06
USP54-215ENST00000497106 HCFC2Q9Y5Z7 792 aa8.42□□□□□ -1.06
USP54-215ENST00000497106 GOLGA8RI6L899 631 aa8.42□□□□□ -1.06
USP54-215ENST00000497106 ATP5HO75947 161 aa8.42□□□□□ -1.06
USP54-215ENST00000497106 OLFM2O95897 454 aa8.42□□□□□ -1.06
USP54-215ENST00000497106 TYRP14679 529 aa8.42□□□□□ -1.06
USP54-215ENST00000497106 IGFBP4P22692 258 aa8.42□□□□□ -1.06
USP54-215ENST00000497106 SKIV2L2P42285 1042 aaKnown RBP8.42□□□□□ -1.06
USP54-215ENST00000497106 NADSYN1Q6IA69 706 aa8.42□□□□□ -1.06
USP54-215ENST00000497106 EXOC3L1Q86VI1 746 aa8.42□□□□□ -1.06
USP54-215ENST00000497106 MICALL1Q8N3F8 863 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms