RNA–Protein interactions for RNA: ENST00000495899.1

MRPL55-233, Transcript of mitochondrial ribosomal protein L55, human

TSL 2

Gene MRPL55, Length 790 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MRPL55-233	ENST00000495899	AMACR	Q9UHK6	382 aa		12.5	□□□□□ -0.41
MRPL55-233	ENST00000495899	TSR3	Q9UJK0	312 aa	Known RBP	12.5	□□□□□ -0.41
MRPL55-233	ENST00000495899	SBDS	Q9Y3A5	250 aa	Known RBP eCLIP	12.5	□□□□□ -0.41
MRPL55-233	ENST00000495899	REXO2	Q9Y3B8	237 aa	Known RBP	12.5	□□□□□ -0.41
MRPL55-233	ENST00000495899	PCDHGB2	Q9Y5G2	931 aa		12.5	□□□□□ -0.41
MRPL55-233	ENST00000495899	SNX11	Q9Y5W9	270 aa		12.5	□□□□□ -0.41
MRPL55-233	ENST00000495899	NUP205	Q92621	2012 aa		12.5	□□□□□ -0.41
MRPL55-233	ENST00000495899		A0A1W2PQ67	120 aa		12.49	□□□□□ -0.41
MRPL55-233	ENST00000495899	TLR4	O00206	839 aa		12.49	□□□□□ -0.41
MRPL55-233	ENST00000495899	NEMP1	O14524	444 aa		12.49	□□□□□ -0.41
MRPL55-233	ENST00000495899	MUSK	O15146	869 aa		12.49	□□□□□ -0.41
MRPL55-233	ENST00000495899	MATN3	O15232	486 aa		12.49	□□□□□ -0.41
MRPL55-233	ENST00000495899	PJA2	O43164	708 aa		12.49	□□□□□ -0.41
MRPL55-233	ENST00000495899	MFSD11	O43934	449 aa		12.49	□□□□□ -0.41
MRPL55-233	ENST00000495899	HNRNPA2B1	P22626	353 aa	Known RBP	12.49	□□□□□ -0.41
MRPL55-233	ENST00000495899	XPA	P23025	273 aa	Predicted RBP	12.49	□□□□□ -0.41
MRPL55-233	ENST00000495899	CES1	P23141	567 aa		12.49	□□□□□ -0.41
MRPL55-233	ENST00000495899	AKT2	P31751	481 aa		12.49	□□□□□ -0.41
MRPL55-233	ENST00000495899	ABL2	P42684	1182 aa		12.49	□□□□□ -0.41
MRPL55-233	ENST00000495899	CTSK	P43235	329 aa		12.49	□□□□□ -0.41
MRPL55-233	ENST00000495899	MMP13	P45452	471 aa		12.49	□□□□□ -0.41
MRPL55-233	ENST00000495899	RGR	P47804	291 aa		12.49	□□□□□ -0.41
MRPL55-233	ENST00000495899	SCNN1B	P51168	640 aa		12.49	□□□□□ -0.41
MRPL55-233	ENST00000495899	VAV2	P52735	878 aa		12.49	□□□□□ -0.41
MRPL55-233	ENST00000495899	BCL2L1	Q07817	233 aa		12.49	□□□□□ -0.41
MRPL55-233	ENST00000495899	ELP6	Q0PNE2	266 aa		12.49	□□□□□ -0.41
MRPL55-233	ENST00000495899	SGCG	Q13326	291 aa		12.49	□□□□□ -0.41
MRPL55-233	ENST00000495899	TAZ	Q16635	292 aa		12.49	□□□□□ -0.41
MRPL55-233	ENST00000495899	UGP2	Q16851	508 aa		12.49	□□□□□ -0.41
MRPL55-233	ENST00000495899	ZNF423	Q2M1K9	1284 aa		12.49	□□□□□ -0.41
MRPL55-233	ENST00000495899	CFAP58	Q5T655	872 aa		12.49	□□□□□ -0.41
MRPL55-233	ENST00000495899	SLC9A4	Q6AI14	798 aa		12.49	□□□□□ -0.41
MRPL55-233	ENST00000495899	DAAM2	Q86T65	1068 aa		12.49	□□□□□ -0.41
MRPL55-233	ENST00000495899	CAMK1D	Q8IU85	385 aa		12.49	□□□□□ -0.41
MRPL55-233	ENST00000495899	RCOR2	Q8IZ40	523 aa		12.49	□□□□□ -0.41
MRPL55-233	ENST00000495899	TMEM145	Q8NBT3	493 aa		12.49	□□□□□ -0.41
MRPL55-233	ENST00000495899	TPCN2	Q8NHX9	752 aa		12.49	□□□□□ -0.41
MRPL55-233	ENST00000495899	TRAF3IP1	Q8TDR0	691 aa	Predicted RBP	12.49	□□□□□ -0.41
MRPL55-233	ENST00000495899	MAML1	Q92585	1016 aa		12.49	□□□□□ -0.41
MRPL55-233	ENST00000495899	ECHDC3	Q96DC8	303 aa		12.49	□□□□□ -0.41
MRPL55-233	ENST00000495899	ZNF830	Q96NB3	372 aa	Predicted RBP	12.49	□□□□□ -0.41
MRPL55-233	ENST00000495899	LENG8	Q96PV6	779 aa	Predicted RBP	12.49	□□□□□ -0.41
MRPL55-233	ENST00000495899	NUDCD1	Q96RS6	583 aa		12.49	□□□□□ -0.41
MRPL55-233	ENST00000495899	MGME1	Q9BQP7	344 aa		12.49	□□□□□ -0.41
MRPL55-233	ENST00000495899	ERVMER34-1	Q9H9K5	563 aa		12.49	□□□□□ -0.41
MRPL55-233	ENST00000495899	TFR2	Q9UP52	801 aa		12.49	□□□□□ -0.41
MRPL55-233	ENST00000495899	ZFR2	Q9UPR6	939 aa	Known RBP	12.49	□□□□□ -0.41
MRPL55-233	ENST00000495899	HS3ST3A1	Q9Y663	406 aa		12.49	□□□□□ -0.41
MRPL55-233	ENST00000495899	DCHS1	Q96JQ0	3298 aa		12.49	□□□□□ -0.41
MRPL55-233	ENST00000495899	APOL1	O14791	398 aa		12.48	□□□□□ -0.41
MRPL55-233	ENST00000495899	WNT9A	O14904	365 aa		12.48	□□□□□ -0.41
MRPL55-233	ENST00000495899	SLC31A1	O15431	190 aa		12.48	□□□□□ -0.41
MRPL55-233	ENST00000495899	SOCS5	O75159	536 aa		12.48	□□□□□ -0.41
MRPL55-233	ENST00000495899	ZRANB2	O95218	330 aa	Known RBP eCLIP	12.48	□□□□□ -0.41
MRPL55-233	ENST00000495899	PIGN	O95427	931 aa		12.48	□□□□□ -0.41
MRPL55-233	ENST00000495899	KRT1	P04264	644 aa		12.48	□□□□□ -0.41
MRPL55-233	ENST00000495899	WNT1	P04628	370 aa		12.48	□□□□□ -0.41
MRPL55-233	ENST00000495899	CEACAM1	P13688	526 aa		12.48	□□□□□ -0.41
MRPL55-233	ENST00000495899	CD59	P13987	128 aa		12.48	□□□□□ -0.41
MRPL55-233	ENST00000495899	CR2	P20023	1033 aa		12.48	□□□□□ -0.41
MRPL55-233	ENST00000495899	NR2C2	P49116	596 aa		12.48	□□□□□ -0.41
MRPL55-233	ENST00000495899	NXPH1	P58417	271 aa		12.48	□□□□□ -0.41
MRPL55-233	ENST00000495899	GBE1	Q04446	702 aa		12.48	□□□□□ -0.41
MRPL55-233	ENST00000495899	KIF5A	Q12840	1032 aa		12.48	□□□□□ -0.41
MRPL55-233	ENST00000495899	SLC10A2	Q12908	348 aa	Predicted RBP	12.48	□□□□□ -0.41
MRPL55-233	ENST00000495899	TFDP2	Q14188	446 aa		12.48	□□□□□ -0.41
MRPL55-233	ENST00000495899	SUZ12	Q15022	739 aa	Known RBP	12.48	□□□□□ -0.41
MRPL55-233	ENST00000495899	TMEM52B	Q4KMG9	183 aa		12.48	□□□□□ -0.41
MRPL55-233	ENST00000495899	SEL1L3	Q68CR1	1132 aa		12.48	□□□□□ -0.41
MRPL55-233	ENST00000495899	ERAP2	Q6P179	960 aa		12.48	□□□□□ -0.41
MRPL55-233	ENST00000495899	DBX2	Q6ZNG2	339 aa		12.48	□□□□□ -0.41
MRPL55-233	ENST00000495899	BZW1	Q7L1Q6	419 aa	Known RBP	12.48	□□□□□ -0.41
MRPL55-233	ENST00000495899	PIP4P1	Q86T03	277 aa		12.48	□□□□□ -0.41
MRPL55-233	ENST00000495899	KATNAL2	Q8IYT4	538 aa		12.48	□□□□□ -0.41
MRPL55-233	ENST00000495899	PLD5	Q8N7P1	536 aa		12.48	□□□□□ -0.41
MRPL55-233	ENST00000495899	OR2I1P	Q8NGU4	316 aa		12.48	□□□□□ -0.41
MRPL55-233	ENST00000495899	KIAA1524	Q8TCG1	905 aa		12.48	□□□□□ -0.41
MRPL55-233	ENST00000495899	HDAC11	Q96DB2	347 aa		12.48	□□□□□ -0.41
MRPL55-233	ENST00000495899	PRR14	Q9BWN1	585 aa		12.48	□□□□□ -0.41
MRPL55-233	ENST00000495899	LACRT	Q9GZZ8	138 aa		12.48	□□□□□ -0.41
MRPL55-233	ENST00000495899	BRD8	Q9H0E9	1235 aa		12.48	□□□□□ -0.41
MRPL55-233	ENST00000495899	SLC32A1	Q9H598	525 aa		12.48	□□□□□ -0.41
MRPL55-233	ENST00000495899	GDF3	Q9NR23	364 aa		12.48	□□□□□ -0.41
MRPL55-233	ENST00000495899	TM7SF3	Q9NS93	570 aa		12.48	□□□□□ -0.41
MRPL55-233	ENST00000495899	DTL	Q9NZJ0	730 aa		12.48	□□□□□ -0.41
MRPL55-233	ENST00000495899	SALL4	Q9UJQ4	1053 aa		12.48	□□□□□ -0.41
MRPL55-233	ENST00000495899	HYOU1	Q9Y4L1	999 aa		12.48	□□□□□ -0.41
MRPL55-233	ENST00000495899	DUSP10	Q9Y6W6	482 aa		12.48	□□□□□ -0.41
MRPL55-233	ENST00000495899	RALGAPA1	Q6GYQ0	2036 aa		12.48	□□□□□ -0.41
MRPL55-233	ENST00000495899	CEP192	Q8TEP8	1941 aa		12.47	□□□□□ -0.41
MRPL55-233	ENST00000495899	CFAP69	A5D8W1	941 aa		12.47	□□□□□ -0.41
MRPL55-233	ENST00000495899	IGLON5	A6NGN9	336 aa		12.47	□□□□□ -0.41
MRPL55-233	ENST00000495899	TRAFD1	O14545	582 aa	Predicted RBP	12.47	□□□□□ -0.41
MRPL55-233	ENST00000495899	YKT6	O15498	198 aa		12.47	□□□□□ -0.41
MRPL55-233	ENST00000495899	SPINT1	O43278	529 aa		12.47	□□□□□ -0.41
MRPL55-233	ENST00000495899	PCDHGA12	O60330	932 aa		12.47	□□□□□ -0.41
MRPL55-233	ENST00000495899	KCNK5	O95279	499 aa		12.47	□□□□□ -0.41
MRPL55-233	ENST00000495899	PAK4	O96013	591 aa	Predicted RBP	12.47	□□□□□ -0.41
MRPL55-233	ENST00000495899	TNNT1	P13805	278 aa		12.47	□□□□□ -0.41
MRPL55-233	ENST00000495899	CCNB1	P14635	433 aa		12.47	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms