RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 FOXM1Q08050 763 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 SMAD1Q15797 465 aaKnown RBP9.76□□□□□ -0.85
SYNE1-230ENST00000495090 FAM187BQ17R55 369 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 TRIM16LQ309B1 348 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 CYBRD1Q53TN4 286 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 DEPDC1Q5TB30 811 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 PDZD4Q76G19 769 aaPredicted RBP9.76□□□□□ -0.85
SYNE1-230ENST00000495090 TMEM192Q8IY95 271 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 CPNE9Q8IYJ1 553 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 TTC30BQ8N4P2 665 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 MINDY1Q8N5J2 469 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 CCNYL1Q8N7R7 359 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 C12orf29Q8N999 325 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 DNAAF3Q8N9W5 541 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 PAPD5Q8NDF8 572 aaKnown RBP9.76□□□□□ -0.85
SYNE1-230ENST00000495090 TRPV3Q8NET8 790 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 RNF139Q8WU17 664 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 WNK4Q96J92 1243 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 HEPHQ9BQS7 1158 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 KIFC1Q9BW19 673 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 MUC3BQ9H195 1237 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 GBA3Q9H227 469 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 NANOGQ9H9S0 305 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 SETD4Q9NVD3 440 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 CCDC167Q9P0B6 97 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 KLHL8Q9P2G9 620 aaPredicted RBP9.76□□□□□ -0.85
SYNE1-230ENST00000495090 ZNF639Q9UID6 485 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 TRHDEQ9UKU6 1024 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 GIT1Q9Y2X7 761 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 AFG3L2Q9Y4W6 797 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 CORINQ9Y5Q5 1042 aa9.76□□□□□ -0.85
SYNE1-230ENST00000495090 COL11A1P12107 1806 aaPredicted RBP9.75□□□□□ -0.85
SYNE1-230ENST00000495090 PHGDHO43175 533 aaKnown RBP9.75□□□□□ -0.85
SYNE1-230ENST00000495090 GPC4O75487 556 aa9.75□□□□□ -0.85
SYNE1-230ENST00000495090 UBA1P22314 1058 aaKnown RBP9.75□□□□□ -0.85
SYNE1-230ENST00000495090 ACADSBP45954 432 aa9.75□□□□□ -0.85
SYNE1-230ENST00000495090 GLRBP48167 497 aa9.75□□□□□ -0.85
SYNE1-230ENST00000495090 GTF2A2P52657 109 aa9.75□□□□□ -0.85
SYNE1-230ENST00000495090 ADARB1P78563 741 aaKnown RBP9.75□□□□□ -0.85
SYNE1-230ENST00000495090 MBTD1Q05BQ5 628 aa9.75□□□□□ -0.85
SYNE1-230ENST00000495090 TRAF2Q12933 501 aa9.75□□□□□ -0.85
SYNE1-230ENST00000495090 ZNF846Q147U1 533 aa9.75□□□□□ -0.85
SYNE1-230ENST00000495090 TMEM132DQ14C87 1099 aa9.75□□□□□ -0.85
SYNE1-230ENST00000495090 COQ5Q5HYK3 327 aa9.75□□□□□ -0.85
SYNE1-230ENST00000495090 INTS6LQ5JSJ4 861 aaKnown RBP9.75□□□□□ -0.85
SYNE1-230ENST00000495090 CNSTQ6PJW8 725 aa9.75□□□□□ -0.85
SYNE1-230ENST00000495090 IGFN1Q86VF2 1251 aa9.75□□□□□ -0.85
SYNE1-230ENST00000495090 ZC3H7AQ8IWR0 971 aaKnown RBP9.75□□□□□ -0.85
SYNE1-230ENST00000495090 KLHDC8BQ8IXV7 354 aa9.75□□□□□ -0.85
SYNE1-230ENST00000495090 ADGRG5Q8IZF4 528 aa9.75□□□□□ -0.85
SYNE1-230ENST00000495090 SNX31Q8N9S9 440 aa9.75□□□□□ -0.85
SYNE1-230ENST00000495090 TXNDC5Q8NBS9 432 aaKnown RBP9.75□□□□□ -0.85
SYNE1-230ENST00000495090 CCNYQ8ND76 341 aa9.75□□□□□ -0.85
SYNE1-230ENST00000495090 C17orf50Q8WW18 174 aa9.75□□□□□ -0.85
SYNE1-230ENST00000495090 CYGBQ8WWM9 190 aa9.75□□□□□ -0.85
SYNE1-230ENST00000495090 SEPT1Q8WYJ6 367 aa9.75□□□□□ -0.85
SYNE1-230ENST00000495090 TAMM41Q96BW9 452 aa9.75□□□□□ -0.85
SYNE1-230ENST00000495090 C8orf37Q96NL8 207 aa9.75□□□□□ -0.85
SYNE1-230ENST00000495090 CYP2S1Q96SQ9 504 aa9.75□□□□□ -0.85
SYNE1-230ENST00000495090 VAT1Q99536 393 aa9.75□□□□□ -0.85
SYNE1-230ENST00000495090 TRMOQ9BU70 441 aa9.75□□□□□ -0.85
SYNE1-230ENST00000495090 TEX13BQ9BXU2 312 aa9.75□□□□□ -0.85
SYNE1-230ENST00000495090 NAA50Q9GZZ1 169 aaKnown RBP9.75□□□□□ -0.85
SYNE1-230ENST00000495090 OSBPL2Q9H1P3 480 aa9.75□□□□□ -0.85
SYNE1-230ENST00000495090 POMKQ9H5K3 350 aa9.75□□□□□ -0.85
SYNE1-230ENST00000495090 TUT1Q9H6E5 874 aaKnown RBP9.75□□□□□ -0.85
SYNE1-230ENST00000495090 RMI1Q9H9A7 625 aa9.75□□□□□ -0.85
SYNE1-230ENST00000495090 INTS10Q9NVR2 710 aaKnown RBP9.75□□□□□ -0.85
SYNE1-230ENST00000495090 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP9.75□□□□□ -0.85
SYNE1-230ENST00000495090 GTSE1Q9NYZ3 720 aa9.75□□□□□ -0.85
SYNE1-230ENST00000495090 SEPT10Q9P0V9 454 aa9.75□□□□□ -0.85
SYNE1-230ENST00000495090 GMIPQ9P107 970 aa9.75□□□□□ -0.85
SYNE1-230ENST00000495090 NDUFAF1Q9Y375 327 aa9.75□□□□□ -0.85
SYNE1-230ENST00000495090 CPQQ9Y646 472 aa9.75□□□□□ -0.85
SYNE1-230ENST00000495090 LCTP09848 1927 aa9.75□□□□□ -0.85
SYNE1-230ENST00000495090 PHIPQ8WWQ0 1821 aa9.75□□□□□ -0.85
SYNE1-230ENST00000495090 KRBA1A5PL33 1030 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 INO80B-WBP1J3KQ70 363 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 J3QRK9 145 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 DCLK1O15075 740 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 PSMD3O43242 534 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 B4GALT5O43286 388 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 AQP9O43315 295 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 DNAJB5O75953 348 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 GSTT2P0CG29 244 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 GSTT2BP0CG30 244 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 UMPSP11172 480 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 STMN1P16949 149 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 S100A1P23297 94 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 RFC2P35250 354 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 MATKP42679 507 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 ABCG1P45844 678 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 RPS9P46781 194 aaKnown RBP9.74□□□□□ -0.85
SYNE1-230ENST00000495090 STX1BP61266 288 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 POU5F1BQ06416 359 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 TNK2Q07912 1038 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 DGKZQ13574 1117 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 CYP2A13Q16696 494 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 SLC25A52Q3SY17 297 aa9.74□□□□□ -0.85
SYNE1-230ENST00000495090 BROXQ5VW32 411 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms