RNA–Protein interactions for RNA: ENST00000493957.5

UBA3-211, Transcript of ubiquitin like modifier activating enzyme 3, human

TSL 3

Gene UBA3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBA3-211	ENST00000493957	ZRANB2	O95218	330 aa	Known RBP eCLIP	11.77	□□□□□ -0.53
UBA3-211	ENST00000493957	WNT1	P04628	370 aa		11.77	□□□□□ -0.53
UBA3-211	ENST00000493957	PYGM	P11217	842 aa		11.77	□□□□□ -0.53
UBA3-211	ENST00000493957	CCNC	P24863	283 aa		11.77	□□□□□ -0.53
UBA3-211	ENST00000493957	MAPK8	P45983	427 aa		11.77	□□□□□ -0.53
UBA3-211	ENST00000493957	CSNK1D	P48730	415 aa		11.77	□□□□□ -0.53
UBA3-211	ENST00000493957	CSNK1E	P49674	416 aa	Known RBP	11.77	□□□□□ -0.53
UBA3-211	ENST00000493957	CCR5	P51681	352 aa		11.77	□□□□□ -0.53
UBA3-211	ENST00000493957	DSC2	Q02487	901 aa		11.77	□□□□□ -0.53
UBA3-211	ENST00000493957	PPID	Q08752	370 aa	Known RBP	11.77	□□□□□ -0.53
UBA3-211	ENST00000493957	SFSWAP	Q12872	951 aa	Known RBP	11.77	□□□□□ -0.53
UBA3-211	ENST00000493957	TRAF2	Q12933	501 aa		11.77	□□□□□ -0.53
UBA3-211	ENST00000493957	PTPRR	Q15256	657 aa		11.77	□□□□□ -0.53
UBA3-211	ENST00000493957	DUOXA1	Q1HG43	343 aa		11.77	□□□□□ -0.53
UBA3-211	ENST00000493957	ZNF284	Q2VY69	593 aa		11.77	□□□□□ -0.53
UBA3-211	ENST00000493957	TFDP3	Q5H9I0	405 aa		11.77	□□□□□ -0.53
UBA3-211	ENST00000493957	MARC1	Q5VT66	337 aa		11.77	□□□□□ -0.53
UBA3-211	ENST00000493957	KDM7A	Q6ZMT4	941 aa		11.77	□□□□□ -0.53
UBA3-211	ENST00000493957	PEX26	Q7Z412	305 aa		11.77	□□□□□ -0.53
UBA3-211	ENST00000493957	CCDC13	Q8IYE1	715 aa		11.77	□□□□□ -0.53
UBA3-211	ENST00000493957	RCOR2	Q8IZ40	523 aa		11.77	□□□□□ -0.53
UBA3-211	ENST00000493957	RBM41	Q96IZ5	413 aa	Known RBP	11.77	□□□□□ -0.53
UBA3-211	ENST00000493957	LRIG1	Q96JA1	1093 aa		11.77	□□□□□ -0.53
UBA3-211	ENST00000493957	FAM118B	Q9BPY3	351 aa		11.77	□□□□□ -0.53
UBA3-211	ENST00000493957	OSBPL1A	Q9BXW6	950 aa		11.77	□□□□□ -0.53
UBA3-211	ENST00000493957	SUV39H2	Q9H5I1	410 aa		11.77	□□□□□ -0.53
UBA3-211	ENST00000493957	C10orf88	Q9H8K7	445 aa		11.77	□□□□□ -0.53
UBA3-211	ENST00000493957	NOD2	Q9HC29	1040 aa		11.77	□□□□□ -0.53
UBA3-211	ENST00000493957	PREB	Q9HCU5	417 aa		11.77	□□□□□ -0.53
UBA3-211	ENST00000493957	FZD3	Q9NPG1	666 aa		11.77	□□□□□ -0.53
UBA3-211	ENST00000493957	PCDHGC4	Q9Y5F7	938 aa		11.77	□□□□□ -0.53
UBA3-211	ENST00000493957	CCDC66	A2RUB6	948 aa		11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	TRAFD1	O14545	582 aa	Predicted RBP	11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	CDX4	O14627	284 aa	Predicted RBP	11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	AREL1	O15033	823 aa		11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	SLC31A1	O15431	190 aa		11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	SERPINF2	P08697	491 aa		11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	CCDC175	P0C221	793 aa		11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	CCNB1	P14635	433 aa		11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	ENG	P17813	658 aa		11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	MX2	P20592	715 aa		11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	HOXD12	P35452	270 aa		11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	RENBP	P51606	427 aa		11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	RWDD2B	P57060	319 aa		11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	AP1S1	P61966	158 aa		11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	RAD51	Q06609	339 aa		11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	NSUN2	Q08J23	767 aa	Known RBP eCLIP	11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	NIPAL4	Q0D2K0	466 aa		11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	AP1B1	Q10567	949 aa		11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	GRIK2	Q13002	908 aa		11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	HNRNPD	Q14103	355 aa	Known RBP	11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	PPP2R5E	Q16537	467 aa		11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	TMEM259	Q4ZIN3	620 aa		11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	TIGD7	Q6NT04	549 aa	Predicted RBP	11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	BBS12	Q6ZW61	710 aa		11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	TTC7B	Q86TV6	843 aa		11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	TRIM69	Q86WT6	500 aa		11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	HORMAD1	Q86X24	394 aa		11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	LRRC49	Q8IUZ0	686 aa		11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	GPR161	Q8N6U8	529 aa	Known RBP	11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	CNTD1	Q8N815	330 aa		11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	RMDN1	Q96DB5	314 aa		11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	ECHDC3	Q96DC8	303 aa		11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	PDLIM2	Q96JY6	352 aa		11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	CALR3	Q96L12	384 aa	Known RBP	11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	SMIM14	Q96QK8	99 aa		11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	NUDCD1	Q96RS6	583 aa		11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	TUBGCP5	Q96RT8	1024 aa		11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	SEMA3C	Q99985	751 aa		11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	WRAP53	Q9BUR4	548 aa	Known RBP	11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	GTPBP2	Q9BX10	602 aa	Known RBP	11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	KDM4C	Q9H3R0	1056 aa		11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	ATP13A3	Q9H7F0	1226 aa		11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	CAAP1	Q9H8G2	361 aa		11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	PCDH12	Q9NPG4	1184 aa		11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	RBM22	Q9NW64	420 aa	Known RBP eCLIP	11.76	□□□□□ -0.53	2e-6	■■■■□ 25.8
UBA3-211	ENST00000493957	SEPT10	Q9P0V9	454 aa		11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	DKK3	Q9UBP4	350 aa		11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	AMFR	Q9UKV5	643 aa		11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	SLC6A14	Q9UN76	642 aa		11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	PPP2R2C	Q9Y2T4	447 aa		11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	SBDS	Q9Y3A5	250 aa	Known RBP eCLIP	11.76	□□□□□ -0.53
UBA3-211	ENST00000493957	TTLL3	Q9Y4R7	772 aa		11.76	□□□□□ -0.53
UBA3-211	ENST00000493957		A0A0U1RQS6	177 aa		11.75	□□□□□ -0.53
UBA3-211	ENST00000493957		A0A1W2PR77	199 aa		11.75	□□□□□ -0.53
UBA3-211	ENST00000493957	IGLON5	A6NGN9	336 aa		11.75	□□□□□ -0.53
UBA3-211	ENST00000493957	UPK3BL1	B0FP48	263 aa		11.75	□□□□□ -0.53
UBA3-211	ENST00000493957	UPK3BL2	E5RIL1	263 aa		11.75	□□□□□ -0.53
UBA3-211	ENST00000493957		H0Y8X5	98 aa		11.75	□□□□□ -0.53
UBA3-211	ENST00000493957	KCNK3	O14649	394 aa		11.75	□□□□□ -0.53
UBA3-211	ENST00000493957	RAD51B	O15315	384 aa		11.75	□□□□□ -0.53
UBA3-211	ENST00000493957	AP1G1	O43747	822 aa		11.75	□□□□□ -0.53
UBA3-211	ENST00000493957	KRT86	O43790	486 aa		11.75	□□□□□ -0.53
UBA3-211	ENST00000493957	JCHAIN	P01591	159 aa		11.75	□□□□□ -0.53
UBA3-211	ENST00000493957	GNS	P15586	552 aa		11.75	□□□□□ -0.53
UBA3-211	ENST00000493957	ZFX	P17010	805 aa	Predicted RBP	11.75	□□□□□ -0.53
UBA3-211	ENST00000493957	TGM2	P21980	687 aa		11.75	□□□□□ -0.53
UBA3-211	ENST00000493957	SERPINA4	P29622	427 aa		11.75	□□□□□ -0.53
UBA3-211	ENST00000493957	IFI35	P80217	286 aa	Predicted RBP	11.75	□□□□□ -0.53
UBA3-211	ENST00000493957	LMNB2	Q03252	620 aa		11.75	□□□□□ -0.53

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