RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 KDELR3O43731 214 aa10.83□□□□□ -0.68
USP4-214ENST00000491791 ITM2AO43736 263 aa10.83□□□□□ -0.68
USP4-214ENST00000491791 MAGEC1O60732 1142 aa10.83□□□□□ -0.68
USP4-214ENST00000491791 PMPCBO75439 489 aa10.83□□□□□ -0.68
USP4-214ENST00000491791 NEBLO76041 1014 aa10.83□□□□□ -0.68
USP4-214ENST00000491791 CBX6O95503 412 aa10.83□□□□□ -0.68
USP4-214ENST00000491791 PENKP01210 267 aaPredicted RBP10.83□□□□□ -0.68
USP4-214ENST00000491791 KCNA4P22459 653 aa10.83□□□□□ -0.68
USP4-214ENST00000491791 HOXD9P28356 352 aaPredicted RBP10.83□□□□□ -0.68
USP4-214ENST00000491791 ARRB2P32121 409 aa10.83□□□□□ -0.68
USP4-214ENST00000491791 KPNA2P52292 529 aaKnown RBP10.83□□□□□ -0.68
USP4-214ENST00000491791 RAP1GDS1P52306 607 aa10.83□□□□□ -0.68
USP4-214ENST00000491791 THOC5Q13769 683 aaKnown RBP10.83□□□□□ -0.68
USP4-214ENST00000491791 IKBKEQ14164 716 aa10.83□□□□□ -0.68
USP4-214ENST00000491791 USP10Q14694 798 aaKnown RBP10.83□□□□□ -0.68
USP4-214ENST00000491791 POU6F1Q14863 301 aa10.83□□□□□ -0.68
USP4-214ENST00000491791 CNGA3Q16281 694 aa10.83□□□□□ -0.68
USP4-214ENST00000491791 SIRPB2Q5JXA9 342 aa10.83□□□□□ -0.68
USP4-214ENST00000491791 LIPMQ5VYY2 423 aa10.83□□□□□ -0.68
USP4-214ENST00000491791 SETD3Q86TU7 594 aaPredicted RBP10.83□□□□□ -0.68
USP4-214ENST00000491791 CENPLQ8N0S6 344 aaPredicted RBP10.83□□□□□ -0.68
USP4-214ENST00000491791 KIF2BQ8N4N8 673 aa10.83□□□□□ -0.68
USP4-214ENST00000491791 OR13J1Q8NGT2 312 aa10.83□□□□□ -0.68
USP4-214ENST00000491791 PPP1R14CQ8TAE6 165 aa10.83□□□□□ -0.68
USP4-214ENST00000491791 TOP1MTQ969P6 601 aa10.83□□□□□ -0.68
USP4-214ENST00000491791 B3GALT6Q96L58 329 aa10.83□□□□□ -0.68
USP4-214ENST00000491791 ANKRD27Q96NW4 1050 aa10.83□□□□□ -0.68
USP4-214ENST00000491791 TRIB3Q96RU7 358 aa10.83□□□□□ -0.68
USP4-214ENST00000491791 UHRF1Q96T88 793 aaPredicted RBP10.83□□□□□ -0.68
USP4-214ENST00000491791 C19orf43Q9BQ61 176 aa10.83□□□□□ -0.68
USP4-214ENST00000491791 MGME1Q9BQP7 344 aa10.83□□□□□ -0.68
USP4-214ENST00000491791 NMUR2Q9GZQ4 415 aa10.83□□□□□ -0.68
USP4-214ENST00000491791 ZNF395Q9H8N7 513 aaPredicted RBP10.83□□□□□ -0.68
USP4-214ENST00000491791 IL1RAPL1Q9NZN1 696 aa10.83□□□□□ -0.68
USP4-214ENST00000491791 DNAJC16Q9Y2G8 782 aa10.83□□□□□ -0.68
USP4-214ENST00000491791 YBX2Q9Y2T7 364 aaKnown RBP10.83□□□□□ -0.68
USP4-214ENST00000491791 TET1Q8NFU7 2136 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 MYLKQ15746 1914 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 FAM95CA0A1B0GW59 222 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.82□□□□□ -0.68
USP4-214ENST00000491791 NPHS1O60500 1241 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 EFCAB14O75071 495 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 SOAT2O75908 522 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 STMN1P16949 149 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 CR2P20023 1033 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 COL9A1P20849 921 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 PRDX6P30041 224 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 ADSLP30566 484 aaPredicted RBP10.82□□□□□ -0.68
USP4-214ENST00000491791 OR1E1P30953 314 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 OR1D2P34982 312 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 ETFBP38117 255 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 CD86P42081 329 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 SLC1A2P43004 574 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 MNAT1P51948 309 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 ARPP19P56211 112 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 GNA12Q03113 381 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 GALNT1Q10472 559 aaPredicted RBP10.82□□□□□ -0.68
USP4-214ENST00000491791 ITGA9Q13797 1035 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 ADGRE1Q14246 886 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 DLG2Q15700 870 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 RALGPS1Q5JS13 557 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 ICE2Q659A1 982 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 EPGNQ6UW88 154 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 PRSS55Q6UWB4 352 aaPredicted RBP10.82□□□□□ -0.68
USP4-214ENST00000491791 ATG14Q6ZNE5 492 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 TFAP2DQ7Z6R9 452 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 MIB1Q86YT6 1006 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 TMPRSS6Q8IU80 811 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 CILP2Q8IUL8 1156 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 MFSD6LQ8IWD5 586 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 TCEAL8Q8IYN2 117 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 KIRREL3Q8IZU9 778 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 SLC39A11Q8N1S5 342 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 BBS5Q8N3I7 341 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 ENDOVQ8N8Q3 282 aaKnown RBP10.82□□□□□ -0.68
USP4-214ENST00000491791 FAM13CQ8NE31 585 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 ACVR1CQ8NER5 493 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 BRSK1Q8TDC3 778 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 GPR152Q8TDT2 470 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 CCDC126Q96EE4 140 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 TSPAN17Q96FV3 270 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 UBXN10Q96LJ8 280 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 TSNARE1Q96NA8 513 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 MIPEPQ99797 713 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 DDX50Q9BQ39 737 aaKnown RBP10.82□□□□□ -0.68
USP4-214ENST00000491791 MRPL57Q9BQC6 102 aaKnown RBP10.82□□□□□ -0.68
USP4-214ENST00000491791 TACO1Q9BSH4 297 aaKnown RBP10.82□□□□□ -0.68
USP4-214ENST00000491791 GATA5Q9BWX5 397 aaPredicted RBP10.82□□□□□ -0.68
USP4-214ENST00000491791 KLF16Q9BXK1 252 aaPredicted RBP10.82□□□□□ -0.68
USP4-214ENST00000491791 CADM1Q9BY67 442 aaKnown RBP10.82□□□□□ -0.68
USP4-214ENST00000491791 CDH19Q9H159 772 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 EBF2Q9HAK2 575 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 POPDC3Q9HBV1 291 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 FBXO6Q9NRD1 293 aaPredicted RBP10.82□□□□□ -0.68
USP4-214ENST00000491791 ZNF358Q9NW07 568 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 TAS2R1Q9NYW7 299 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 TRPM5Q9NZQ8 1165 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 HCSTQ9UBK5 93 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 VTI1BQ9UEU0 232 aa10.82□□□□□ -0.68
USP4-214ENST00000491791 SLC2A6Q9UGQ3 507 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms