RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 ZNF284Q2VY69 593 aa16.43■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 TMEM259Q4ZIN3 620 aa16.43■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 SEL1L3Q68CR1 1132 aa16.43■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 ALG1LQ6GMV1 187 aa16.43■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 NAPEPLDQ6IQ20 393 aa16.43■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 PAF1Q8N7H5 531 aa16.43■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 NETO1Q8TDF5 533 aa16.43■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 HAUS1Q96CS2 278 aa16.43■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 ECHDC3Q96DC8 303 aa16.43■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 HES6Q96HZ4 224 aa16.43■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 FEM1CQ96JP0 617 aa16.43■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 SERAC1Q96JX3 654 aa16.43■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 PDLIM2Q96JY6 352 aa16.43■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 OSBPL8Q9BZF1 889 aa16.43■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 AASDHPPTQ9NRN7 309 aa16.43■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 SAE1Q9UBE0 346 aaPredicted RBP16.43■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 GGT7Q9UJ14 662 aa16.43■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 PPP2R2CQ9Y2T4 447 aa16.43■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 TTLL3Q9Y4R7 772 aa16.43■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 PCDH15Q96QU1 1955 aa16.43■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 APOC4-APOC2K7ER74 178 aa16.42■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 TRAFD1O14545 582 aaPredicted RBP16.42■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 ARHGAP33O14559 1287 aa16.42■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 HTRA2O43464 458 aaPredicted RBP16.42■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 JCHAINP01591 159 aa16.42■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 APOC2P02655 101 aa16.42■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 PYGMP11217 842 aa16.42■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 CSNK1EP49674 416 aaKnown RBP16.42■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 ELP6Q0PNE2 266 aa16.42■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 GRIK2Q13002 908 aa16.42■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 ZBTB17Q13105 803 aa16.42■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 GSE1Q14687 1217 aa16.42■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 PRKD1Q15139 912 aaPredicted RBP16.42■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 UGP2Q16851 508 aa16.42■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 CCDC181Q5TID7 509 aa16.42■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 ERAP2Q6P179 960 aa16.42■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 ADAT2Q7Z6V5 191 aaKnown RBP16.42■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 ZSWIM9Q86XI8 627 aa16.42■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 CXorf40AQ8TE69 158 aa16.42■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 TFB1MQ8WVM0 346 aaKnown RBP16.42■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 KLK6Q92876 244 aa16.42■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 ALS2CR12Q96Q35 445 aa16.42■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 IL12RB2Q99665 862 aa16.42■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 SEMA3CQ99985 751 aa16.42■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 HERPUD2Q9BSE4 406 aa16.42■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 GTPBP2Q9BX10 602 aaKnown RBP16.42■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 ZDHHC5Q9C0B5 715 aa16.42■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 PCDH12Q9NPG4 1184 aa16.42■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 SEPT10Q9P0V9 454 aa16.42■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 CDV3Q9UKY7 258 aaKnown RBP16.42■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 ATP8A1Q9Y2Q0 1164 aa16.42■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 ANKRD36A6QL64 1941 aa16.41■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 A0A1B0GVT2 93 aa16.41■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 A0A1W2PQ67 120 aa16.41■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 PRAMEF26H0Y7S4 382 aa16.41■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 SLC31A1O15431 190 aa16.41■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 PRLRP16471 622 aa16.41■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 ITIH2P19823 946 aa16.41■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 CES1P23141 567 aa16.41■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 CD38P28907 300 aa16.41■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 LIMK1P53667 647 aa16.41■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 ATXN3P54252 364 aaPredicted RBP16.41■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 POLR2LP62875 67 aaKnown RBP16.41■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 DSC2Q02487 901 aa16.41■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 TRAF2Q12933 501 aa16.41■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 ZNF211Q13398 564 aaPredicted RBP16.41■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 SLC45A4Q5BKX6 768 aa16.41■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 AADACL2Q6P093 401 aa16.41■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 LAYNQ6UX15 382 aa16.41■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 B4GALNT4Q76KP1 1039 aa16.41■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 ZC3H18Q86VM9 953 aaKnown RBP16.41■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 PDCD6IPQ8WUM4 868 aaKnown RBP16.41■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 UBE2Q2Q8WVN8 375 aa16.41■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 SLC17A9Q9BYT1 436 aa16.41■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 TMEM9BQ9NQ34 198 aa16.41■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 PCDHGC4Q9Y5F7 938 aa16.41■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 RIF1Q5UIP0 2472 aaKnown RBP16.41■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 EP300Q09472 2414 aaPredicted RBP16.4■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 A0A1W2PR77 199 aa16.4■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 IGLON5A6NGN9 336 aa16.4■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 HACD1B0YJ81 288 aa16.4■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 CDX4O14627 284 aaPredicted RBP16.4■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 RIOK3O14730 519 aaKnown RBP16.4■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 WNT9AO14904 365 aa16.4■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 TJP3O95049 919 aa16.4■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 CPP00450 1065 aa16.4■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 PRKCGP05129 697 aa16.4■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 SDHBP21912 280 aa16.4■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 HNRNPA2B1P22626 353 aaKnown RBP16.4■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 AKT2P31751 481 aa16.4■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 MMP12P39900 470 aa16.4■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 BNC1Q01954 994 aa16.4■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 FGL2Q14314 439 aa16.4■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 NOMO1Q15155 1222 aa16.4■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 RSPO4Q2I0M5 234 aaPredicted RBP16.4■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 TMEM52BQ4KMG9 183 aa16.4■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 ARMC12Q5T9G4 340 aa16.4■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 STPG1Q5TH74 334 aa16.4■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP16.4■□□□□ 0.22
MSH5-SAPCD1-206ENST00000491552 ARRDC2Q8TBH0 407 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms