RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 ZNF542PQ5EBM4 170 aa18.29■□□□□ 0.52
COL9A3-214ENST00000490398 Q6ZSR6 202 aa18.29■□□□□ 0.52
COL9A3-214ENST00000490398 ECHDC3Q96DC8 303 aa18.29■□□□□ 0.52
COL9A3-214ENST00000490398 ZNF641Q96N77 438 aaPredicted RBP18.29■□□□□ 0.52
COL9A3-214ENST00000490398 ERVMER34-1Q9H9K5 563 aa18.29■□□□□ 0.52
COL9A3-214ENST00000490398 NOD2Q9HC29 1040 aa18.29■□□□□ 0.52
COL9A3-214ENST00000490398 SALL4Q9UJQ4 1053 aa18.29■□□□□ 0.52
COL9A3-214ENST00000490398 INTUQ9ULD6 942 aa18.29■□□□□ 0.52
COL9A3-214ENST00000490398 REXO2Q9Y3B8 237 aaKnown RBP18.29■□□□□ 0.52
COL9A3-214ENST00000490398 PCDHGC4Q9Y5F7 938 aa18.29■□□□□ 0.52
COL9A3-214ENST00000490398 PCDHA13Q9Y5I0 950 aa18.29■□□□□ 0.52
COL9A3-214ENST00000490398 HS3ST3A1Q9Y663 406 aa18.29■□□□□ 0.52
COL9A3-214ENST00000490398 TP53BP1Q12888 1972 aaPredicted RBP18.29■□□□□ 0.52
COL9A3-214ENST00000490398 LRRD1A4D1F6 860 aa18.28■□□□□ 0.52
COL9A3-214ENST00000490398 RIOK3O14730 519 aaKnown RBP18.28■□□□□ 0.52
COL9A3-214ENST00000490398 HYAL3O43820 417 aaPredicted RBP18.28■□□□□ 0.52
COL9A3-214ENST00000490398 FTH1P19P0C7X4 201 aa18.28■□□□□ 0.52
COL9A3-214ENST00000490398 COMTP21964 271 aa18.28■□□□□ 0.52
COL9A3-214ENST00000490398 FECHP22830 423 aa18.28■□□□□ 0.52
COL9A3-214ENST00000490398 RXRGP48443 463 aa18.28■□□□□ 0.52
COL9A3-214ENST00000490398 ZNF235Q14590 738 aa18.28■□□□□ 0.52
COL9A3-214ENST00000490398 SUZ12Q15022 739 aaKnown RBP18.28■□□□□ 0.52
COL9A3-214ENST00000490398 PTPRRQ15256 657 aa18.28■□□□□ 0.52
COL9A3-214ENST00000490398 RAD9BQ6WBX8 426 aa18.28■□□□□ 0.52
COL9A3-214ENST00000490398 PTAR1Q7Z6K3 402 aaPredicted RBP18.28■□□□□ 0.52
COL9A3-214ENST00000490398 CENPTQ96BT3 561 aa18.28■□□□□ 0.52
COL9A3-214ENST00000490398 CNTNAP3BQ96NU0 1288 aa18.28■□□□□ 0.52
COL9A3-214ENST00000490398 LENG8Q96PV6 779 aaPredicted RBP18.28■□□□□ 0.52
COL9A3-214ENST00000490398 RNF157Q96PX1 679 aa18.28■□□□□ 0.52
COL9A3-214ENST00000490398 PANX2Q96RD6 677 aa18.28■□□□□ 0.52
COL9A3-214ENST00000490398 TUBGCP5Q96RT8 1024 aa18.28■□□□□ 0.52
COL9A3-214ENST00000490398 CNTNAP3Q9BZ76 1288 aa18.28■□□□□ 0.52
COL9A3-214ENST00000490398 ATP13A3Q9H7F0 1226 aa18.28■□□□□ 0.52
COL9A3-214ENST00000490398 GPR27Q9NS67 375 aa18.28■□□□□ 0.52
COL9A3-214ENST00000490398 PCDHB9Q9Y5E1 797 aa18.28■□□□□ 0.52
COL9A3-214ENST00000490398 GOLGA8CPA6NN73 597 aa18.27■□□□□ 0.52
COL9A3-214ENST00000490398 DFNA5O60443 496 aa18.27■□□□□ 0.52
COL9A3-214ENST00000490398 SERPINA4P29622 427 aa18.27■□□□□ 0.52
COL9A3-214ENST00000490398 IGFALSP35858 605 aa18.27■□□□□ 0.52
COL9A3-214ENST00000490398 MMP12P39900 470 aa18.27■□□□□ 0.52
COL9A3-214ENST00000490398 GARSP41250 739 aaKnown RBP18.27■□□□□ 0.52
COL9A3-214ENST00000490398 GRK6P43250 576 aa18.27■□□□□ 0.52
COL9A3-214ENST00000490398 BCL2L1Q07817 233 aa18.27■□□□□ 0.52
COL9A3-214ENST00000490398 OVGP1Q12889 678 aa18.27■□□□□ 0.52
COL9A3-214ENST00000490398 TRAF2Q12933 501 aa18.27■□□□□ 0.52
COL9A3-214ENST00000490398 RALGDSQ12967 914 aa18.27■□□□□ 0.52
COL9A3-214ENST00000490398 SGCGQ13326 291 aa18.27■□□□□ 0.52
COL9A3-214ENST00000490398 ZFYVE27Q5T4F4 411 aa18.27■□□□□ 0.52
COL9A3-214ENST00000490398 NPNTQ6UXI9 565 aa18.27■□□□□ 0.52
COL9A3-214ENST00000490398 KYAT3Q6YP21 454 aaKnown RBP18.27■□□□□ 0.52
COL9A3-214ENST00000490398 NYAP1Q6ZVC0 841 aa18.27■□□□□ 0.52
COL9A3-214ENST00000490398 SLC25A45Q8N413 288 aa18.27■□□□□ 0.52
COL9A3-214ENST00000490398 CHCHD4Q8N4Q1 142 aa18.27■□□□□ 0.52
COL9A3-214ENST00000490398 TEX26Q8N6G2 289 aa18.27■□□□□ 0.52
COL9A3-214ENST00000490398 EID2Q8N6I1 236 aa18.27■□□□□ 0.52
COL9A3-214ENST00000490398 PLD5Q8N7P1 536 aa18.27■□□□□ 0.52
COL9A3-214ENST00000490398 TP53I13Q8NBR0 393 aaPredicted RBP18.27■□□□□ 0.52
COL9A3-214ENST00000490398 HCAR2Q8TDS4 363 aa18.27■□□□□ 0.52
COL9A3-214ENST00000490398 CXorf40AQ8TE69 158 aa18.27■□□□□ 0.52
COL9A3-214ENST00000490398 ASB12Q8WXK4 309 aa18.27■□□□□ 0.52
COL9A3-214ENST00000490398 RNF25Q96BH1 459 aaPredicted RBP18.27■□□□□ 0.52
COL9A3-214ENST00000490398 SMIM14Q96QK8 99 aa18.27■□□□□ 0.52
COL9A3-214ENST00000490398 NUDCD1Q96RS6 583 aa18.27■□□□□ 0.52
COL9A3-214ENST00000490398 MGME1Q9BQP7 344 aa18.27■□□□□ 0.52
COL9A3-214ENST00000490398 NT5MQ9NPB1 228 aa18.27■□□□□ 0.52
COL9A3-214ENST00000490398 UCKL1Q9NWZ5 548 aa18.27■□□□□ 0.52
COL9A3-214ENST00000490398 DTLQ9NZJ0 730 aa18.27■□□□□ 0.52
COL9A3-214ENST00000490398 LCMT1Q9UIC8 334 aa18.27■□□□□ 0.52
COL9A3-214ENST00000490398 ANGPTL2Q9UKU9 493 aa18.27■□□□□ 0.52
COL9A3-214ENST00000490398 PNMA8BQ9ULN7 279 aaPredicted RBP18.27■□□□□ 0.52
COL9A3-214ENST00000490398 ATP8A1Q9Y2Q0 1164 aa18.27■□□□□ 0.52
COL9A3-214ENST00000490398 TRPM6Q9BX84 2022 aa18.27■□□□□ 0.51
COL9A3-214ENST00000490398 A6NNZ2 444 aa18.26■□□□□ 0.51
COL9A3-214ENST00000490398 A8MX80 341 aa18.26■□□□□ 0.51
COL9A3-214ENST00000490398 TM7SF2O76062 418 aa18.26■□□□□ 0.51
COL9A3-214ENST00000490398 KRT1P04264 644 aa18.26■□□□□ 0.51
COL9A3-214ENST00000490398 ITGAVP06756 1048 aa18.26■□□□□ 0.51
COL9A3-214ENST00000490398 C6P13671 934 aa18.26■□□□□ 0.51
COL9A3-214ENST00000490398 GM2AP17900 193 aa18.26■□□□□ 0.51
COL9A3-214ENST00000490398 XPAP23025 273 aaPredicted RBP18.26■□□□□ 0.51
COL9A3-214ENST00000490398 MMP13P45452 471 aa18.26■□□□□ 0.51
COL9A3-214ENST00000490398 MARCKSL1P49006 195 aa18.26■□□□□ 0.51
COL9A3-214ENST00000490398 LIG3P49916 1009 aa18.26■□□□□ 0.51
COL9A3-214ENST00000490398 PFN3P60673 137 aa18.26■□□□□ 0.51
COL9A3-214ENST00000490398 AP1S1P61966 158 aa18.26■□□□□ 0.51
COL9A3-214ENST00000490398 FZD2Q14332 565 aa18.26■□□□□ 0.51
COL9A3-214ENST00000490398 GRM3Q14832 879 aa18.26■□□□□ 0.51
COL9A3-214ENST00000490398 LLGL1Q15334 1064 aa18.26■□□□□ 0.51
COL9A3-214ENST00000490398 MARC1Q5VT66 337 aa18.26■□□□□ 0.51
COL9A3-214ENST00000490398 BRAT1Q6PJG6 821 aa18.26■□□□□ 0.51
COL9A3-214ENST00000490398 B4GALNT4Q76KP1 1039 aa18.26■□□□□ 0.51
COL9A3-214ENST00000490398 GLRX5Q86SX6 157 aa18.26■□□□□ 0.51
COL9A3-214ENST00000490398 MAP7D3Q8IWC1 876 aa18.26■□□□□ 0.51
COL9A3-214ENST00000490398 CCDC170Q8IYT3 715 aa18.26■□□□□ 0.51
COL9A3-214ENST00000490398 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP18.26■□□□□ 0.51
COL9A3-214ENST00000490398 MAML1Q92585 1016 aa18.26■□□□□ 0.51
COL9A3-214ENST00000490398 SCUBE2Q9NQ36 999 aa18.26■□□□□ 0.51
COL9A3-214ENST00000490398 KLF15Q9UIH9 416 aa18.26■□□□□ 0.51
COL9A3-214ENST00000490398 KLK13Q9UKR3 277 aa18.26■□□□□ 0.51
COL9A3-214ENST00000490398 ALG6Q9Y672 507 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms