RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 CFAP58Q5T655 872 aa23.23■■□□□ 1.31
COL9A3-213ENST00000489045 ZNF548Q8NEK5 533 aaPredicted RBP23.23■■□□□ 1.31
COL9A3-213ENST00000489045 HSPH1Q92598 858 aa23.23■■□□□ 1.31
COL9A3-213ENST00000489045 IQCDQ96DY2 449 aa23.23■■□□□ 1.31
COL9A3-213ENST00000489045 TUBGCP5Q96RT8 1024 aa23.23■■□□□ 1.31
COL9A3-213ENST00000489045 CINPQ9BW66 212 aaPredicted RBP23.23■■□□□ 1.31
COL9A3-213ENST00000489045 C1QTNF7Q9BXJ2 289 aa23.23■■□□□ 1.31
COL9A3-213ENST00000489045 KLF15Q9UIH9 416 aa23.23■■□□□ 1.31
COL9A3-213ENST00000489045 A0A087X0T9 212 aa23.22■■□□□ 1.31
COL9A3-213ENST00000489045 NEMP2A6NFY4 417 aa23.22■■□□□ 1.31
COL9A3-213ENST00000489045 H3BM21 787 aa23.22■■□□□ 1.31
COL9A3-213ENST00000489045 H3BRJ5 948 aa23.22■■□□□ 1.31
COL9A3-213ENST00000489045 SCAMP1O15126 338 aa23.22■■□□□ 1.31
COL9A3-213ENST00000489045 NEBLO76041 1014 aa23.22■■□□□ 1.31
COL9A3-213ENST00000489045 GYPCP04921 128 aa23.22■■□□□ 1.31
COL9A3-213ENST00000489045 FAM228BP0C875 321 aa23.22■■□□□ 1.31
COL9A3-213ENST00000489045 PTMSP20962 102 aa23.22■■□□□ 1.31
COL9A3-213ENST00000489045 IL10RBQ08334 325 aa23.22■■□□□ 1.31
COL9A3-213ENST00000489045 PIGHQ14442 188 aaPredicted RBP23.22■■□□□ 1.31
COL9A3-213ENST00000489045 UGP2Q16851 508 aa23.22■■□□□ 1.31
COL9A3-213ENST00000489045 ZSCAN23Q3MJ62 389 aa23.22■■□□□ 1.31
COL9A3-213ENST00000489045 SRLQ86TD4 932 aa23.22■■□□□ 1.31
COL9A3-213ENST00000489045 CAMK1DQ8IU85 385 aa23.22■■□□□ 1.31
COL9A3-213ENST00000489045 TP53INP2Q8IXH6 220 aa23.22■■□□□ 1.31
COL9A3-213ENST00000489045 TP53I13Q8NBR0 393 aaPredicted RBP23.22■■□□□ 1.31
COL9A3-213ENST00000489045 BTBD6Q96KE9 485 aa23.22■■□□□ 1.31
COL9A3-213ENST00000489045 ZNF641Q96N77 438 aaPredicted RBP23.22■■□□□ 1.31
COL9A3-213ENST00000489045 PCDH12Q9NPG4 1184 aa23.22■■□□□ 1.31
COL9A3-213ENST00000489045 MBNL1Q9NR56 388 aaKnown RBP23.22■■□□□ 1.31
COL9A3-213ENST00000489045 STAU2Q9NUL3 570 aaKnown RBP eCLIP23.22■■□□□ 1.31
COL9A3-213ENST00000489045 DKK4Q9UBT3 224 aa23.22■■□□□ 1.31
COL9A3-213ENST00000489045 COQ6Q9Y2Z9 468 aa23.22■■□□□ 1.31
COL9A3-213ENST00000489045 LUC7L2Q9Y383 392 aaKnown RBP23.22■■□□□ 1.31
COL9A3-213ENST00000489045 SERPINA4P29622 427 aa23.21■■□□□ 1.31
COL9A3-213ENST00000489045 ARL4AP40617 200 aa23.21■■□□□ 1.31
COL9A3-213ENST00000489045 CSNK1DP48730 415 aa23.21■■□□□ 1.31
COL9A3-213ENST00000489045 THOP1P52888 689 aa23.21■■□□□ 1.31
COL9A3-213ENST00000489045 EIF2B5Q13144 721 aaKnown RBP23.21■■□□□ 1.31
COL9A3-213ENST00000489045 NFKBIBQ15653 356 aa23.21■■□□□ 1.31
COL9A3-213ENST00000489045 BOLA3Q53S33 107 aa23.21■■□□□ 1.31
COL9A3-213ENST00000489045 TXNRD3NBQ6F5E7 133 aa23.21■■□□□ 1.31
COL9A3-213ENST00000489045 BRAT1Q6PJG6 821 aa23.21■■□□□ 1.31
COL9A3-213ENST00000489045 ZSWIM9Q86XI8 627 aa23.21■■□□□ 1.31
COL9A3-213ENST00000489045 LZTR1Q8N653 840 aa23.21■■□□□ 1.31
COL9A3-213ENST00000489045 APOLD1Q96LR9 279 aa23.21■■□□□ 1.31
COL9A3-213ENST00000489045 NUP85Q9BW27 656 aa23.21■■□□□ 1.31
COL9A3-213ENST00000489045 ATP13A3Q9H7F0 1226 aa23.21■■□□□ 1.31
COL9A3-213ENST00000489045 ANAPC7Q9UJX3 599 aa23.21■■□□□ 1.31
COL9A3-213ENST00000489045 LRP4O75096 1905 aa23.21■■□□□ 1.31
COL9A3-213ENST00000489045 ADAMTS20P59510 1910 aa23.21■■□□□ 1.31
COL9A3-213ENST00000489045 K7ESM1 405 aa23.2■■□□□ 1.3
COL9A3-213ENST00000489045 RIOK3O14730 519 aaKnown RBP23.2■■□□□ 1.3
COL9A3-213ENST00000489045 PRKCGP05129 697 aa23.2■■□□□ 1.3
COL9A3-213ENST00000489045 RARAP10276 462 aa23.2■■□□□ 1.3
COL9A3-213ENST00000489045 CKMT1AP12532 417 aa23.2■■□□□ 1.3
COL9A3-213ENST00000489045 MYF5P13349 255 aa23.2■■□□□ 1.3
COL9A3-213ENST00000489045 C6P13671 934 aa23.2■■□□□ 1.3
COL9A3-213ENST00000489045 JUNDP17535 347 aa23.2■■□□□ 1.3
COL9A3-213ENST00000489045 AMPD1P23109 780 aa23.2■■□□□ 1.3
COL9A3-213ENST00000489045 YPEL5P62699 121 aa23.2■■□□□ 1.3
COL9A3-213ENST00000489045 INSM1Q01101 510 aaPredicted RBP23.2■■□□□ 1.3
COL9A3-213ENST00000489045 TARDBPQ13148 414 aaKnown RBP eCLIP23.2■■□□□ 1.3
COL9A3-213ENST00000489045 PTK2BQ14289 1009 aa23.2■■□□□ 1.3
COL9A3-213ENST00000489045 RFTN1Q14699 578 aaPredicted RBP23.2■■□□□ 1.3
COL9A3-213ENST00000489045 IRF4Q15306 451 aa23.2■■□□□ 1.3
COL9A3-213ENST00000489045 ERAP2Q6P179 960 aa23.2■■□□□ 1.3
COL9A3-213ENST00000489045 POLNQ7Z5Q5 900 aa23.2■■□□□ 1.3
COL9A3-213ENST00000489045 NIPA2Q8N8Q9 360 aa23.2■■□□□ 1.3
COL9A3-213ENST00000489045 DUSP23Q9BVJ7 150 aa23.2■■□□□ 1.3
COL9A3-213ENST00000489045 ETNK2Q9NVF9 386 aa23.2■■□□□ 1.3
COL9A3-213ENST00000489045 IP6K2Q9UHH9 426 aa23.2■■□□□ 1.3
COL9A3-213ENST00000489045 RAXQ9Y2V3 346 aa23.2■■□□□ 1.3
COL9A3-213ENST00000489045 MUSKO15146 869 aa23.19■■□□□ 1.3
COL9A3-213ENST00000489045 AQP9O43315 295 aa23.19■■□□□ 1.3
COL9A3-213ENST00000489045 CYP1A2P05177 515 aa23.19■■□□□ 1.3
COL9A3-213ENST00000489045 CASP14P31944 242 aa23.19■■□□□ 1.3
COL9A3-213ENST00000489045 MMP12P39900 470 aa23.19■■□□□ 1.3
COL9A3-213ENST00000489045 SEMG2Q02383 582 aa23.19■■□□□ 1.3
COL9A3-213ENST00000489045 SLC25A11Q02978 314 aaKnown RBP23.19■■□□□ 1.3
COL9A3-213ENST00000489045 ALKBH5Q6P6C2 394 aaKnown RBP23.19■■□□□ 1.3
COL9A3-213ENST00000489045 TMCO3Q6UWJ1 677 aa23.19■■□□□ 1.3
COL9A3-213ENST00000489045 RBFAQ8N0V3 343 aa23.19■■□□□ 1.3
COL9A3-213ENST00000489045 LMX1AQ8TE12 382 aa23.19■■□□□ 1.3
COL9A3-213ENST00000489045 RFFLQ8WZ73 363 aa23.19■■□□□ 1.3
COL9A3-213ENST00000489045 NXPE2Q96DL1 559 aa23.19■■□□□ 1.3
COL9A3-213ENST00000489045 CSPG4P5Q96PW8 444 aa23.19■■□□□ 1.3
COL9A3-213ENST00000489045 XPO4Q9C0E2 1151 aaKnown RBP23.19■■□□□ 1.3
COL9A3-213ENST00000489045 ATP8A1Q9Y2Q0 1164 aa23.19■■□□□ 1.3
COL9A3-213ENST00000489045 CSNK1G3Q9Y6M4 447 aa23.19■■□□□ 1.3
COL9A3-213ENST00000489045 LAMA5O15230 3695 aa23.19■■□□□ 1.3
COL9A3-213ENST00000489045 LY6G6EA0A0G2JKS1 128 aa23.18■■□□□ 1.3
COL9A3-213ENST00000489045 EIF4A3P38919 411 aaKnown RBP23.18■■□□□ 1.3
COL9A3-213ENST00000489045 LIG3P49916 1009 aa23.18■■□□□ 1.3
COL9A3-213ENST00000489045 E2F1Q01094 437 aa23.18■■□□□ 1.3
COL9A3-213ENST00000489045 BCL2L1Q07817 233 aa23.18■■□□□ 1.3
COL9A3-213ENST00000489045 NSUN2Q08J23 767 aaKnown RBP eCLIP23.18■■□□□ 1.3
COL9A3-213ENST00000489045 SLC10A7Q0GE19 358 aa23.18■■□□□ 1.3
COL9A3-213ENST00000489045 LBRQ14739 615 aaKnown RBP23.18■■□□□ 1.3
COL9A3-213ENST00000489045 LRRC14Q15048 493 aa23.18■■□□□ 1.3
COL9A3-213ENST00000489045 CCDC122Q5T0U0 273 aa23.18■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms