RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 RSPH1Q8WYR4 309 aa18.09■□□□□ 0.49
VIM-206ENST00000487938 SH3GL3Q99963 347 aa18.09■□□□□ 0.49
VIM-206ENST00000487938 SMOC2Q9H3U7 446 aa18.09■□□□□ 0.49
VIM-206ENST00000487938 OSER1Q9NX31 292 aa18.09■□□□□ 0.49
VIM-206ENST00000487938 UBAP1Q9NZ09 502 aa18.09■□□□□ 0.49
VIM-206ENST00000487938 RIMS3Q9UJD0 308 aa18.09■□□□□ 0.49
VIM-206ENST00000487938 PADI3Q9ULW8 664 aa18.09■□□□□ 0.49
VIM-206ENST00000487938 A8MT66 165 aa18.08■□□□□ 0.48
VIM-206ENST00000487938 PGM3O95394 542 aa18.08■□□□□ 0.48
VIM-206ENST00000487938 CYP11A1P05108 521 aa18.08■□□□□ 0.48
VIM-206ENST00000487938 ETS2P15036 469 aa18.08■□□□□ 0.48
VIM-206ENST00000487938 TSPAN8P19075 237 aa18.08■□□□□ 0.48
VIM-206ENST00000487938 PMLP29590 882 aa18.08■□□□□ 0.48
VIM-206ENST00000487938 CD86P42081 329 aa18.08■□□□□ 0.48
VIM-206ENST00000487938 DNAJB13P59910 316 aa18.08■□□□□ 0.48
VIM-206ENST00000487938 TECRLQ5HYJ1 363 aa18.08■□□□□ 0.48
VIM-206ENST00000487938 MRPL10Q7Z7H8 261 aaKnown RBP18.08■□□□□ 0.48
VIM-206ENST00000487938 SATL1Q86VE3 508 aa18.08■□□□□ 0.48
VIM-206ENST00000487938 MFN1Q8IWA4 741 aa18.08■□□□□ 0.48
VIM-206ENST00000487938 CCDC117Q8IWD4 279 aaPredicted RBP18.08■□□□□ 0.48
VIM-206ENST00000487938 THEM5Q8N1Q8 247 aa18.08■□□□□ 0.48
VIM-206ENST00000487938 GALNT4Q8N4A0 578 aa18.08■□□□□ 0.48
VIM-206ENST00000487938 RTL3Q8N8U3 475 aaKnown RBP18.08■□□□□ 0.48
VIM-206ENST00000487938 NOL6Q9H6R4 1146 aaKnown RBP18.08■□□□□ 0.48
VIM-206ENST00000487938 TRPC7Q9HCX4 862 aa18.08■□□□□ 0.48
VIM-206ENST00000487938 Q9Y3F1 56 aa18.08■□□□□ 0.48
VIM-206ENST00000487938 MTF2Q9Y483 593 aaPredicted RBP18.08■□□□□ 0.48
VIM-206ENST00000487938 AK5Q9Y6K8 562 aa18.08■□□□□ 0.48
VIM-206ENST00000487938 C15orf38-AP3S2A0A0A6YYH1 394 aa18.07■□□□□ 0.48
VIM-206ENST00000487938 TNFRSF10BO14763 440 aa18.07■□□□□ 0.48
VIM-206ENST00000487938 GPR182O15218 404 aa18.07■□□□□ 0.48
VIM-206ENST00000487938 BCAS2O75934 225 aaPredicted RBP18.07■□□□□ 0.48
VIM-206ENST00000487938 MT-CO1P00395 513 aa18.07■□□□□ 0.48
VIM-206ENST00000487938 PIM1P11309 404 aaPredicted RBP18.07■□□□□ 0.48
VIM-206ENST00000487938 PTK2BQ14289 1009 aa18.07■□□□□ 0.48
VIM-206ENST00000487938 GK3PQ14409 553 aa18.07■□□□□ 0.48
VIM-206ENST00000487938 RARS2Q5T160 578 aaKnown RBP18.07■□□□□ 0.48
VIM-206ENST00000487938 KDELC1Q6UW63 502 aa18.07■□□□□ 0.48
VIM-206ENST00000487938 ARPINQ7Z6K5 226 aa18.07■□□□□ 0.48
VIM-206ENST00000487938 PELI3Q8N2H9 469 aa18.07■□□□□ 0.48
VIM-206ENST00000487938 HMGCLL1Q8TB92 370 aa18.07■□□□□ 0.48
VIM-206ENST00000487938 TRIM62Q9BVG3 475 aa18.07■□□□□ 0.48
VIM-206ENST00000487938 MRPL1Q9BYD6 325 aaKnown RBP18.07■□□□□ 0.48
VIM-206ENST00000487938 TBC1D13Q9NVG8 400 aa18.07■□□□□ 0.48
VIM-206ENST00000487938 CCDC167Q9P0B6 97 aa18.07■□□□□ 0.48
VIM-206ENST00000487938 TBC1D30Q9Y2I9 924 aa18.07■□□□□ 0.48
VIM-206ENST00000487938 ACOT8O14734 319 aa18.07■□□□□ 0.48
VIM-206ENST00000487938 IPO13O94829 963 aaKnown RBP18.07■□□□□ 0.48
VIM-206ENST00000487938 CRTAMO95727 393 aa18.07■□□□□ 0.48
VIM-206ENST00000487938 KPNA2P52292 529 aaKnown RBP18.07■□□□□ 0.48
VIM-206ENST00000487938 TSPY1Q01534 308 aa18.07■□□□□ 0.48
VIM-206ENST00000487938 PFKPQ01813 784 aa18.07■□□□□ 0.48
VIM-206ENST00000487938 SLC10A7Q0GE19 358 aa18.07■□□□□ 0.48
VIM-206ENST00000487938 PDAP1Q13442 181 aaKnown RBP18.07■□□□□ 0.48
VIM-206ENST00000487938 IHHQ14623 411 aa18.07■□□□□ 0.48
VIM-206ENST00000487938 AGAP9Q5VTM2 703 aa18.07■□□□□ 0.48
VIM-206ENST00000487938 AFMIDQ63HM1 303 aa18.07■□□□□ 0.48
VIM-206ENST00000487938 ZFP1Q6P2D0 407 aa18.07■□□□□ 0.48
VIM-206ENST00000487938 CUZD1Q86UP6 607 aa18.07■□□□□ 0.48
VIM-206ENST00000487938 ZNF354CQ86Y25 554 aa18.07■□□□□ 0.48
VIM-206ENST00000487938 ARHGAP18Q8N392 663 aa18.07■□□□□ 0.48
VIM-206ENST00000487938 OR6P1Q8NGX9 317 aa18.07■□□□□ 0.48
VIM-206ENST00000487938 SH3RF2Q8TEC5 729 aa18.07■□□□□ 0.48
VIM-206ENST00000487938 PRKD2Q9BZL6 878 aa18.07■□□□□ 0.48
VIM-206ENST00000487938 PCDHAC1Q9H158 963 aa18.07■□□□□ 0.48
VIM-206ENST00000487938 BCAP29Q9UHQ4 241 aa18.07■□□□□ 0.48
VIM-206ENST00000487938 FNDC1Q4ZHG4 1894 aaPredicted RBP18.06■□□□□ 0.48
VIM-206ENST00000487938 OR51F1A6NGY5 319 aa18.06■□□□□ 0.48
VIM-206ENST00000487938 M0QZQ0 153 aa18.06■□□□□ 0.48
VIM-206ENST00000487938 DENRO43583 198 aaKnown RBP18.06■□□□□ 0.48
VIM-206ENST00000487938 MYCNP04198 464 aaPredicted RBP18.06■□□□□ 0.48
VIM-206ENST00000487938 LTA4HP09960 611 aaKnown RBP18.06■□□□□ 0.48
VIM-206ENST00000487938 THPOP40225 353 aa18.06■□□□□ 0.48
VIM-206ENST00000487938 SERPINH1P50454 418 aaKnown RBP18.06■□□□□ 0.48
VIM-206ENST00000487938 MLLT6P55198 1093 aaPredicted RBP18.06■□□□□ 0.48
VIM-206ENST00000487938 PSME3P61289 254 aa18.06■□□□□ 0.48
VIM-206ENST00000487938 AGKQ53H12 422 aa18.06■□□□□ 0.48
VIM-206ENST00000487938 HECTD2Q5U5R9 776 aa18.06■□□□□ 0.48
VIM-206ENST00000487938 PIK3R6Q5UE93 754 aa18.06■□□□□ 0.48
VIM-206ENST00000487938 BEND5Q7L4P6 421 aa18.06■□□□□ 0.48
VIM-206ENST00000487938 ZFAND2BQ8WV99 257 aa18.06■□□□□ 0.48
VIM-206ENST00000487938 PABPC5Q96DU9 382 aaKnown RBP18.06■□□□□ 0.48
VIM-206ENST00000487938 CNBD2Q96M20 576 aa18.06■□□□□ 0.48
VIM-206ENST00000487938 MTG1Q9BT17 334 aaPredicted RBP18.06■□□□□ 0.48
VIM-206ENST00000487938 SLC25A51Q9H1U9 297 aa18.06■□□□□ 0.48
VIM-206ENST00000487938 PCDHGA7Q9Y5G6 932 aa18.06■□□□□ 0.48
VIM-206ENST00000487938 HEATR9A2RTY3 570 aa18.06■□□□□ 0.48
VIM-206ENST00000487938 E7ENX8 843 aa18.06■□□□□ 0.48
VIM-206ENST00000487938 OR6B1O95007 311 aa18.06■□□□□ 0.48
VIM-206ENST00000487938 PEX11BO96011 259 aa18.06■□□□□ 0.48
VIM-206ENST00000487938 HAPLN1P10915 354 aaPredicted RBP18.06■□□□□ 0.48
VIM-206ENST00000487938 LEPRP48357 1165 aaKnown RBP18.06■□□□□ 0.48
VIM-206ENST00000487938 KCNC1P48547 511 aa18.06■□□□□ 0.48
VIM-206ENST00000487938 DSC2Q02487 901 aa18.06■□□□□ 0.48
VIM-206ENST00000487938 RFTN1Q14699 578 aaPredicted RBP18.06■□□□□ 0.48
VIM-206ENST00000487938 CLEC6AQ6EIG7 209 aa18.06■□□□□ 0.48
VIM-206ENST00000487938 PAOXQ6QHF9 649 aa18.06■□□□□ 0.48
VIM-206ENST00000487938 TMEM207Q6UWW9 146 aa18.06■□□□□ 0.48
VIM-206ENST00000487938 TRPV1Q8NER1 839 aa18.06■□□□□ 0.48
VIM-206ENST00000487938 OR13J1Q8NGT2 312 aa18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms