RNA–Protein interactions for RNA: ENST00000485994.5

VPS50-218, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-218ENST00000485994 CAMK1GQ96NX5 476 aa7.09□□□□□ -1.27
VPS50-218ENST00000485994 PSKH2Q96QS6 385 aa7.09□□□□□ -1.27
VPS50-218ENST00000485994 KLF6Q99612 283 aaPredicted RBP7.09□□□□□ -1.27
VPS50-218ENST00000485994 NUP85Q9BW27 656 aa7.09□□□□□ -1.27
VPS50-218ENST00000485994 SCNM1Q9BWG6 230 aa7.09□□□□□ -1.27
VPS50-218ENST00000485994 CNTNAP3Q9BZ76 1288 aa7.09□□□□□ -1.27
VPS50-218ENST00000485994 TM6SF2Q9BZW4 377 aa7.09□□□□□ -1.27
VPS50-218ENST00000485994 SUV39H2Q9H5I1 410 aa7.09□□□□□ -1.27
VPS50-218ENST00000485994 ZNHIT6Q9NWK9 470 aaKnown RBP7.09□□□□□ -1.27
VPS50-218ENST00000485994 MYO1AQ9UBC5 1043 aa7.09□□□□□ -1.27
VPS50-218ENST00000485994 UBA2Q9UBT2 640 aaPredicted RBP7.09□□□□□ -1.27
VPS50-218ENST00000485994 INTUQ9ULD6 942 aa7.09□□□□□ -1.27
VPS50-218ENST00000485994 LRRK1Q38SD2 2015 aa7.09□□□□□ -1.27
VPS50-218ENST00000485994 KMT2BQ9UMN6 2715 aaPredicted RBP7.09□□□□□ -1.27
VPS50-218ENST00000485994 SHROOM3Q8TF72 1996 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 SPTY2D1-AS1A0A0U1RR47 76 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 SPAARA0A1B0GVQ0 90 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 TMEM110-MUSTN1A8MSY1 372 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 ZNF487B1APH4 448 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 H3BRJ5 948 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 TRAFD1O14545 582 aaPredicted RBP7.08□□□□□ -1.28
VPS50-218ENST00000485994 SLC31A1O15431 190 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 SPINT1O43278 529 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 BUB1BO60566 1050 aaPredicted RBP7.08□□□□□ -1.28
VPS50-218ENST00000485994 MAFKO60675 156 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 PALMO75781 387 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 MTA2O94776 668 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 PROSCO94903 275 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 PEX11BO96011 259 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 PAK4O96013 591 aaPredicted RBP7.08□□□□□ -1.28
VPS50-218ENST00000485994 CAPNS1P04632 268 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 UGT2B4P06133 528 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 ITGAVP06756 1048 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 PROS1P07225 676 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 TPM1P09493 284 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 TMEM253P0C7T8 217 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 FTH1P19P0C7X4 201 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 THEGLP0DJG4 465 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 CES1P23141 567 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 EPHA8P29322 1005 aaPredicted RBP7.08□□□□□ -1.28
VPS50-218ENST00000485994 MAT2AP31153 395 aaKnown RBP7.08□□□□□ -1.28
VPS50-218ENST00000485994 MAN1A1P33908 653 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 SERPINB6P35237 376 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 RABIFP47224 123 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 PEX5P50542 639 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 PFN3P60673 137 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 YPEL5P62699 121 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 POLR2LP62875 67 aaKnown RBP7.08□□□□□ -1.28
VPS50-218ENST00000485994 INSM1Q01101 510 aaPredicted RBP7.08□□□□□ -1.28
VPS50-218ENST00000485994 SLC25A11Q02978 314 aaKnown RBP7.08□□□□□ -1.28
VPS50-218ENST00000485994 BNIP3Q12983 259 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 TBX2Q13207 712 aaPredicted RBP7.08□□□□□ -1.28
VPS50-218ENST00000485994 ILKQ13418 452 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 FGL2Q14314 439 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 UGP2Q16851 508 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 POM121L1PQ3SYA9 428 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 PPP6R3Q5H9R7 873 aaPredicted RBP7.08□□□□□ -1.28
VPS50-218ENST00000485994 KYAT3Q6YP21 454 aaKnown RBP7.08□□□□□ -1.28
VPS50-218ENST00000485994 CCNI2Q6ZMN8 369 aaPredicted RBP7.08□□□□□ -1.28
VPS50-218ENST00000485994 GCNT7Q6ZNI0 430 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 TMPRSS7Q7RTY8 843 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 SRLQ86TD4 932 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 MAP7D3Q8IWC1 876 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 CBARPQ8N350 705 aaPredicted RBP7.08□□□□□ -1.28
VPS50-218ENST00000485994 GALNT15Q8N3T1 639 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 SDR16C5Q8N3Y7 309 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 TSEN2Q8NCE0 465 aaKnown RBP7.08□□□□□ -1.28
VPS50-218ENST00000485994 GRIN3AQ8TCU5 1115 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 GATA6Q92908 595 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 TBATAQ96M53 351 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 CSPG4P5Q96PW8 444 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 ZDHHC6Q9H6R6 413 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 PCDH18Q9HCL0 1135 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 PRDM9Q9NQV7 894 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 GPATCH2LQ9NWQ4 482 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 KCTD5Q9NXV2 234 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 AMACRQ9UHK6 382 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 IPO11Q9UI26 975 aaKnown RBP7.08□□□□□ -1.28
VPS50-218ENST00000485994 ANAPC7Q9UJX3 599 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 PPIL1Q9Y3C6 166 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 CSNK1G3Q9Y6M4 447 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 ARHGEF17Q96PE2 2063 aaPredicted RBP7.08□□□□□ -1.28
VPS50-218ENST00000485994 ANKRD11Q6UB99 2663 aaPredicted RBP7.08□□□□□ -1.28
VPS50-218ENST00000485994 UNC13CQ8NB66 2214 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 USP24Q9UPU5 2620 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 RP1P56715 2156 aa7.08□□□□□ -1.28
VPS50-218ENST00000485994 APC2O95996 2303 aa7.07□□□□□ -1.28
VPS50-218ENST00000485994 IGF2RP11717 2491 aa7.07□□□□□ -1.28
VPS50-218ENST00000485994 DMXL2Q8TDJ6 3036 aa7.07□□□□□ -1.28
VPS50-218ENST00000485994 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP7.07□□□□□ -1.28
VPS50-218ENST00000485994 POM121BA6NF01 834 aa7.07□□□□□ -1.28
VPS50-218ENST00000485994 NEMP2A6NFY4 417 aa7.07□□□□□ -1.28
VPS50-218ENST00000485994 IGLON5A6NGN9 336 aa7.07□□□□□ -1.28
VPS50-218ENST00000485994 A6NNZ2 444 aa7.07□□□□□ -1.28
VPS50-218ENST00000485994 TERTO14746 1132 aaKnown RBP7.07□□□□□ -1.28
VPS50-218ENST00000485994 FPGTO14772 594 aa7.07□□□□□ -1.28
VPS50-218ENST00000485994 TPP1O14773 563 aa7.07□□□□□ -1.28
VPS50-218ENST00000485994 SCAMP1O15126 338 aa7.07□□□□□ -1.28
VPS50-218ENST00000485994 HTRA2O43464 458 aaPredicted RBP7.07□□□□□ -1.28
VPS50-218ENST00000485994 SOCS5O75159 536 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms