RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 ZRSR1Q15695 479 aaKnown RBP3.32□□□□□ -1.88
VPS50-216ENST00000484954 EFNB3Q15768 340 aa3.32□□□□□ -1.88
VPS50-216ENST00000484954 HSPB2Q16082 182 aa3.32□□□□□ -1.88
VPS50-216ENST00000484954 ADCK5Q3MIX3 580 aa3.32□□□□□ -1.88
VPS50-216ENST00000484954 ESCO2Q56NI9 601 aa3.32□□□□□ -1.88
VPS50-216ENST00000484954 ZNF667Q5HYK9 610 aa3.32□□□□□ -1.88
VPS50-216ENST00000484954 PAPPA-AS1Q5QFB9 102 aa3.32□□□□□ -1.88
VPS50-216ENST00000484954 CES5AQ6NT32 575 aa3.32□□□□□ -1.88
VPS50-216ENST00000484954 FBXL22Q6P050 247 aa3.32□□□□□ -1.88
VPS50-216ENST00000484954 IL20RBQ6UXL0 311 aa3.32□□□□□ -1.88
VPS50-216ENST00000484954 SFTPA2Q8IWL1 248 aa3.32□□□□□ -1.88
VPS50-216ENST00000484954 CPXM2Q8N436 756 aa3.32□□□□□ -1.88
VPS50-216ENST00000484954 RFLNBQ8N5W9 214 aa3.32□□□□□ -1.88
VPS50-216ENST00000484954 ZMIZ2Q8NF64 920 aa3.32□□□□□ -1.88
VPS50-216ENST00000484954 SORCS1Q8WY21 1168 aa3.32□□□□□ -1.88
VPS50-216ENST00000484954 CNOT9Q92600 299 aaKnown RBP3.32□□□□□ -1.88
VPS50-216ENST00000484954 IL17FQ96PD4 163 aa3.32□□□□□ -1.88
VPS50-216ENST00000484954 INPP4AQ96PE3 977 aaPredicted RBP3.32□□□□□ -1.88
VPS50-216ENST00000484954 TWNKQ96RR1 684 aa3.32□□□□□ -1.88
VPS50-216ENST00000484954 ARPC5LQ9BPX5 153 aa3.32□□□□□ -1.88
VPS50-216ENST00000484954 PHF7Q9BWX1 381 aaPredicted RBP3.32□□□□□ -1.88
VPS50-216ENST00000484954 EPHX3Q9H6B9 360 aa3.32□□□□□ -1.88
VPS50-216ENST00000484954 CYSLTR2Q9NS75 346 aa3.32□□□□□ -1.88
VPS50-216ENST00000484954 IFT80Q9P2H3 777 aaPredicted RBP3.32□□□□□ -1.88
VPS50-216ENST00000484954 CTNNAL1Q9UBT7 734 aa3.32□□□□□ -1.88
VPS50-216ENST00000484954 NFS1Q9Y697 457 aa3.32□□□□□ -1.88
VPS50-216ENST00000484954 KIF26BQ2KJY2 2108 aa3.32□□□□□ -1.88
VPS50-216ENST00000484954 NOTCH3Q9UM47 2321 aa3.32□□□□□ -1.88
VPS50-216ENST00000484954 A0A0U1RQF3 1178 aa3.31□□□□□ -1.88
VPS50-216ENST00000484954 C17orf113A0A1B0GUU1 675 aa3.31□□□□□ -1.88
VPS50-216ENST00000484954 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP3.31□□□□□ -1.88
VPS50-216ENST00000484954 CPED1A4D0V7 1026 aa3.31□□□□□ -1.88
VPS50-216ENST00000484954 KLRF2D3W0D1 207 aa3.31□□□□□ -1.88
VPS50-216ENST00000484954 IFNL4K9M1U5 179 aa3.31□□□□□ -1.88
VPS50-216ENST00000484954 LINC01565O15544 149 aa3.31□□□□□ -1.88
VPS50-216ENST00000484954 IGLV2-11P01706 119 aa3.31□□□□□ -1.88
VPS50-216ENST00000484954 F7P08709 466 aaPredicted RBP3.31□□□□□ -1.88
VPS50-216ENST00000484954 CLDN2P57739 230 aa3.31□□□□□ -1.88
VPS50-216ENST00000484954 ARL16Q0P5N6 197 aa3.31□□□□□ -1.88
VPS50-216ENST00000484954 NAA25Q14CX7 972 aa3.31□□□□□ -1.88
VPS50-216ENST00000484954 SOWAHAQ2M3V2 549 aa3.31□□□□□ -1.88
VPS50-216ENST00000484954 LRRC8EQ6NSJ5 796 aa3.31□□□□□ -1.88
VPS50-216ENST00000484954 SHFQ7M4L6 423 aa3.31□□□□□ -1.88
VPS50-216ENST00000484954 SMIM29Q86T20 159 aa3.31□□□□□ -1.88
VPS50-216ENST00000484954 NOXA1Q86UR1 476 aa3.31□□□□□ -1.88
VPS50-216ENST00000484954 NKAPQ8N5F7 415 aaKnown RBP3.31□□□□□ -1.88
VPS50-216ENST00000484954 PARP16Q8N5Y8 322 aa3.31□□□□□ -1.88
VPS50-216ENST00000484954 ZNF441Q8N8Z8 693 aa3.31□□□□□ -1.88
VPS50-216ENST00000484954 LSM14AQ8ND56 463 aaKnown RBP3.31□□□□□ -1.88
VPS50-216ENST00000484954 GJC3Q8NFK1 279 aa3.31□□□□□ -1.88
VPS50-216ENST00000484954 NEK9Q8TD19 979 aa3.31□□□□□ -1.88
VPS50-216ENST00000484954 TMEM255BQ8WV15 326 aa3.31□□□□□ -1.88
VPS50-216ENST00000484954 BICD1Q96G01 975 aa3.31□□□□□ -1.88
VPS50-216ENST00000484954 RPS6KC1Q96S38 1066 aa3.31□□□□□ -1.88
VPS50-216ENST00000484954 SPRY4Q9C004 299 aa3.31□□□□□ -1.88
VPS50-216ENST00000484954 TTYH1Q9H313 450 aaPredicted RBP3.31□□□□□ -1.88
VPS50-216ENST00000484954 LRRC4Q9HBW1 653 aa3.31□□□□□ -1.88
VPS50-216ENST00000484954 PCDHGB5Q9Y5G0 923 aa3.31□□□□□ -1.88
VPS50-216ENST00000484954 PCDHGB3Q9Y5G1 929 aa3.31□□□□□ -1.88
VPS50-216ENST00000484954 MAGEA13PA6NCF6 341 aa3.3□□□□□ -1.88
VPS50-216ENST00000484954 CLGNO14967 610 aa3.3□□□□□ -1.88
VPS50-216ENST00000484954 XPNPEP2O43895 674 aa3.3□□□□□ -1.88
VPS50-216ENST00000484954 KLK8O60259 260 aa3.3□□□□□ -1.88
VPS50-216ENST00000484954 ZIC3O60481 467 aa3.3□□□□□ -1.88
VPS50-216ENST00000484954 TCEA3O75764 348 aa3.3□□□□□ -1.88
VPS50-216ENST00000484954 CLDN14O95500 239 aa3.3□□□□□ -1.88
VPS50-216ENST00000484954 PMS2P2O95744 297 aa3.3□□□□□ -1.88
VPS50-216ENST00000484954 EFNA5P52803 228 aa3.3□□□□□ -1.88
VPS50-216ENST00000484954 TDGQ13569 410 aa3.3□□□□□ -1.88
VPS50-216ENST00000484954 EDRF1Q3B7T1 1238 aa3.3□□□□□ -1.88
VPS50-216ENST00000484954 DCAF6Q58WW2 860 aa3.3□□□□□ -1.88
VPS50-216ENST00000484954 ANKRD45Q5TZF3 282 aa3.3□□□□□ -1.88
VPS50-216ENST00000484954 GSG1LQ6UXU4 331 aa3.3□□□□□ -1.88
VPS50-216ENST00000484954 ZC3HC1Q86WB0 502 aaKnown RBP3.3□□□□□ -1.88
VPS50-216ENST00000484954 POC1AQ8NBT0 407 aa3.3□□□□□ -1.88
VPS50-216ENST00000484954 SPATA22Q8NHS9 363 aa3.3□□□□□ -1.88
VPS50-216ENST00000484954 RUFY2Q8WXA3 655 aa3.3□□□□□ -1.88
VPS50-216ENST00000484954 CCT6BQ92526 530 aa3.3□□□□□ -1.88
VPS50-216ENST00000484954 LRFN5Q96NI6 719 aa3.3□□□□□ -1.88
VPS50-216ENST00000484954 EYA3Q99504 573 aa3.3□□□□□ -1.88
VPS50-216ENST00000484954 REEP2Q9BRK0 252 aa3.3□□□□□ -1.88
VPS50-216ENST00000484954 NUF2Q9BZD4 464 aa3.3□□□□□ -1.88
VPS50-216ENST00000484954 NOD2Q9HC29 1040 aa3.3□□□□□ -1.88
VPS50-216ENST00000484954 TCF7L2Q9NQB0 619 aa3.3□□□□□ -1.88
VPS50-216ENST00000484954 SNX9Q9Y5X1 595 aa3.3□□□□□ -1.88
VPS50-216ENST00000484954 A3GALT2U3KPV4 340 aa3.3□□□□□ -1.88
VPS50-216ENST00000484954 A0A0B4J293 547 aa3.29□□□□□ -1.88
VPS50-216ENST00000484954 ARHGAP10A1A4S6 786 aa3.29□□□□□ -1.88
VPS50-216ENST00000484954 TYW5A2RUC4 315 aaKnown RBP3.29□□□□□ -1.88
VPS50-216ENST00000484954 BMPR1BO00238 502 aa3.29□□□□□ -1.88
VPS50-216ENST00000484954 IRAK2O43187 625 aa3.29□□□□□ -1.88
VPS50-216ENST00000484954 PIP5K1CO60331 668 aa3.29□□□□□ -1.88
VPS50-216ENST00000484954 NDUFS7O75251 213 aa3.29□□□□□ -1.88
VPS50-216ENST00000484954 KRT36O76013 467 aa3.29□□□□□ -1.88
VPS50-216ENST00000484954 LINC00271P0C7V0 271 aa3.29□□□□□ -1.88
VPS50-216ENST00000484954 TCEA1P23193 301 aaKnown RBP3.29□□□□□ -1.88
VPS50-216ENST00000484954 HDAC4P56524 1084 aa3.29□□□□□ -1.88
VPS50-216ENST00000484954 ARL4CP56559 192 aa3.29□□□□□ -1.88
VPS50-216ENST00000484954 HILS1P60008 231 aa3.29□□□□□ -1.88
VPS50-216ENST00000484954 CHRNDQ07001 517 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms