RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 MMEP08473 750 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 PDGFRAP16234 1089 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 PMLP29590 882 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 ACSL1P33121 698 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 SOX5P35711 763 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 CXCR3P49682 368 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 KLK7P49862 253 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 SULT1E1P49888 294 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 PLK1P53350 603 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 POLR2FP61218 127 aaKnown RBP6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 NOMO3P69849 1222 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 SHC2P98077 582 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 CDR2Q01850 454 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 DEUP1Q05D60 604 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 SEMA3BQ13214 749 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 SLC14A1Q13336 389 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 ZNF177Q13360 481 aaPredicted RBP6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 SLC25A52Q3SY17 297 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 CCDC183Q5T5S1 534 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 C9orf64Q5T6V5 341 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 NAA35Q5VZE5 725 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 CXorf57Q6NSI4 855 aaKnown RBP6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 IL27RAQ6UWB1 636 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 USP30Q70CQ3 517 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 TSPYL5Q86VY4 417 aaPredicted RBP6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 XYLT1Q86Y38 959 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 TMEM151BQ8IW70 566 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 DHX40Q8IX18 779 aaKnown RBP6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 APCDD1Q8J025 514 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 ZCCHC9Q8N567 271 aaKnown RBP6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 GANCQ8TET4 914 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 CPA5Q8WXQ8 436 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 SNX19Q92543 992 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 IGSF8Q969P0 613 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 NT5C3BQ969T7 300 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 RPL10LQ96L21 214 aaKnown RBP6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 SPAG5Q96R06 1193 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 NPY6RQ99463 290 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 TKTL2Q9H0I9 626 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 PABPC3Q9H361 631 aaKnown RBP6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 MTG2Q9H4K7 406 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 SGK2Q9HBY8 427 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 PIGVQ9NUD9 493 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 ARHGEF38Q9NXL2 777 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 DUSP13Q9UII6 198 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 SLC25A13Q9UJS0 675 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 NOCTQ9UK39 431 aaKnown RBP6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 VANGL2Q9ULK5 521 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 CHD5Q8TDI0 1954 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 KNL1Q8NG31 2342 aa6.98□□□□□ -1.29
CCDC88A-213ENST00000476903 DOCK9Q9BZ29 2069 aa6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 CABIN1Q9Y6J0 2220 aa6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 LGALS16A8MUM7 142 aa6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 GOLGA8SH3BPF8 625 aa6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 EPHB6O15197 1021 aa6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 MID1O15344 667 aa6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 ADCY5O95622 1261 aa6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 CER1O95813 267 aa6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 CYP1A1P04798 512 aaPredicted RBP6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 ZNF18P17022 549 aa6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 TFE3P19532 575 aaPredicted RBP6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 RDXP35241 583 aaKnown RBP6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 STAT1P42224 750 aa6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 STK19P49842 368 aaPredicted RBP6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 AFF3P51826 1226 aaKnown RBP6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 COPB1P53618 953 aaKnown RBP6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 CDH4P55283 916 aa6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 JAM2P57087 298 aa6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 GRIK2Q13002 908 aa6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 HNRNPDQ14103 355 aaKnown RBP6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 ELAVL3Q14576 367 aaKnown RBP6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 CST6Q15828 149 aa6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 C5orf22Q49AR2 442 aa6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 C2CD6Q53TS8 623 aa6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 OTUD1Q5VV17 481 aaPredicted RBP6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 KIAA0895LQ68EN5 471 aa6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 LRRC31Q6UY01 552 aa6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 TRIM72Q6ZMU5 477 aa6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 ARCQ7LC44 396 aa6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 PIP4P1Q86T03 277 aa6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 MMAAQ8IVH4 418 aaKnown RBP6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 STK40Q8N2I9 435 aa6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 DEFB124Q8NES8 71 aa6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 NEK11Q8NG66 645 aa6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 OR2I1PQ8NGU4 316 aa6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 SLC20A1Q8WUM9 679 aa6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 BIRC7Q96CA5 298 aa6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 PKNOX2Q96KN3 472 aa6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 C1orf74Q96LT6 269 aa6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 CFAP57Q96MR6 1250 aa6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 TBCBQ99426 244 aa6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 OMDQ99983 421 aa6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 DPH2Q9BQC3 489 aaPredicted RBP6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 FEM1AQ9BSK4 669 aa6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 NAT10Q9H0A0 1025 aaKnown RBP6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 SIK2Q9H0K1 926 aa6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 TRIT1Q9H3H1 467 aaKnown RBP6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 C6orf106Q9H6K1 298 aaPredicted RBP6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 NLRC4Q9NPP4 1024 aa6.97□□□□□ -1.29
CCDC88A-213ENST00000476903 FBXL12Q9NXK8 326 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms