RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 SIKE1Q9BRV8 207 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 C17orf80Q9BSJ5 609 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 UBE2OQ9C0C9 1292 aaKnown RBP5.03□□□□□ -1.6
CCDC39-204ENST00000476379 GALNT8Q9NY28 637 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 MOSPD1Q9UJG1 213 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 ZNF229Q9UJW7 825 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 CORO1CQ9ULV4 474 aaPredicted RBP5.03□□□□□ -1.6
CCDC39-204ENST00000476379 TRIP12Q14669 1992 aaPredicted RBP5.03□□□□□ -1.6
CCDC39-204ENST00000476379 MAFGO15525 162 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 LRIG2O94898 1065 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 ZNF865P0CJ78 1059 aaPredicted RBP5.03□□□□□ -1.6
CCDC39-204ENST00000476379 AKR1A1P14550 325 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 CSF2RAP15509 400 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 PTPN1P18031 435 aaKnown RBP5.03□□□□□ -1.6
CCDC39-204ENST00000476379 DSC2Q02487 901 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 MBTD1Q05BQ5 628 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 ITGA7Q13683 1181 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 ZNF789Q5FWF6 425 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 ZNF697Q5TEC3 545 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 IRGCQ6NXR0 463 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 XKR5Q6UX68 686 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 NEK10Q6ZWH5 1172 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 FBXW8Q8N3Y1 598 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 LZTR1Q8N653 840 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 ARL10Q8N8L6 244 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 PTGR2Q8N8N7 351 aaPredicted RBP5.03□□□□□ -1.6
CCDC39-204ENST00000476379 TBATAQ96M53 351 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 TMEM74Q96NL1 305 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 EFHD1Q9BUP0 239 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 TMEM106CQ9BVX2 250 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 MUC3BQ9H195 1237 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 EFCAB1Q9HAE3 211 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 PREBQ9HCU5 417 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 S100A14Q9HCY8 104 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 ITM2CQ9NQX7 267 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 KCNK4Q9NYG8 393 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 RAD54BQ9Y620 910 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 ATG2BQ96BY7 2078 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 SMIM28A0A1B0GU29 152 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 BTN3A1O00481 513 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 ENPP3O14638 875 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 NDUFS3O75489 264 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 RFPL1O75677 317 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 TM7SF2O76062 418 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 PTNP21246 168 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 POU1F1P28069 291 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 NOVP48745 357 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 SERPINB9P50453 376 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 RPL14P50914 215 aaKnown RBP5.03□□□□□ -1.6
CCDC39-204ENST00000476379 ZBTB17Q13105 803 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 MYBPC2Q14324 1141 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 FAM109BQ6ICB4 259 aaPredicted RBP5.03□□□□□ -1.6
CCDC39-204ENST00000476379 ZPBP2Q6X784 338 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 MARK2Q7KZI7 788 aaKnown RBP5.03□□□□□ -1.6
CCDC39-204ENST00000476379 GPRIN1Q7Z2K8 1008 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 ARHGAP18Q8N392 663 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 C12orf50Q8NA57 414 aaPredicted RBP5.03□□□□□ -1.6
CCDC39-204ENST00000476379 VCPIP1Q96JH7 1222 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 ANKRD27Q96NW4 1050 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 TIPINQ9BVW5 301 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 XRN2Q9H0D6 950 aaKnown RBP eCLIP5.03□□□□□ -1.6
CCDC39-204ENST00000476379 XYLT2Q9H1B5 865 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 RGS18Q9NS28 235 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 DCDC2Q9UHG0 476 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 BCAP29Q9UHQ4 241 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 TMA7Q9Y2S6 64 aaKnown RBP5.03□□□□□ -1.6
CCDC39-204ENST00000476379 PCDHA11Q9Y5I1 949 aa5.03□□□□□ -1.6
CCDC39-204ENST00000476379 DOCK2Q92608 1830 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 RRN3P2A6NIE6 340 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 PRPF4O43172 522 aaKnown RBP eCLIP5.02□□□□□ -1.61
CCDC39-204ENST00000476379 DIRAS1O95057 198 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 IL18RAPO95256 599 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 SERPIND1P05546 499 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 PGAM1P18669 254 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 ME2P23368 584 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 ITGB8P26012 769 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 FKBP1BP68106 108 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 SOX4Q06945 474 aaPredicted RBP5.02□□□□□ -1.61
CCDC39-204ENST00000476379 PDK2Q15119 407 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 GALNT10Q86SR1 603 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 EIF1ADQ8N9N8 165 aaKnown RBP5.02□□□□□ -1.61
CCDC39-204ENST00000476379 FNDC5Q8NAU1 212 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 PPP2R3CQ969Q6 453 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 PKP2Q99959 881 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 CAPN10Q9HC96 672 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 EXOSC4Q9NPD3 245 aaKnown RBP5.02□□□□□ -1.61
CCDC39-204ENST00000476379 WBP1LQ9NX94 342 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 MAP10Q9P2G4 905 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 LGALS13Q9UHV8 139 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 BAG5Q9UL15 447 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 RNF112Q9ULX5 631 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 DRG1Q9Y295 367 aaKnown RBP5.02□□□□□ -1.61
CCDC39-204ENST00000476379 TEX264Q9Y6I9 313 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 ZNF831Q5JPB2 1677 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 AHCTF1Q8WYP5 2266 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 PALM2-AKAP2B1ALY0 433 aaPredicted RBP5.02□□□□□ -1.61
CCDC39-204ENST00000476379 ZSCAN9O15535 394 aaPredicted RBP5.02□□□□□ -1.61
CCDC39-204ENST00000476379 SEPT4O43236 478 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 STRNO43815 780 aa5.02□□□□□ -1.61
CCDC39-204ENST00000476379 NOBOXO60393 691 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms