RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 SCLT1Q96NL6 688 aa3.32□□□□□ -1.88
CCDC88A-212ENST00000474059 EGFL8Q99944 293 aa3.32□□□□□ -1.88
CCDC88A-212ENST00000474059 KATNAL1Q9BW62 490 aa3.32□□□□□ -1.88
CCDC88A-212ENST00000474059 ZNF224Q9NZL3 707 aa3.32□□□□□ -1.88
CCDC88A-212ENST00000474059 OR6C3Q9NZP0 311 aa3.32□□□□□ -1.88
CCDC88A-212ENST00000474059 HDAC6Q9UBN7 1215 aa3.32□□□□□ -1.88
CCDC88A-212ENST00000474059 SLC9A2Q9UBY0 812 aa3.32□□□□□ -1.88
CCDC88A-212ENST00000474059 DAPP1Q9UN19 280 aa3.32□□□□□ -1.88
CCDC88A-212ENST00000474059 CGNL1Q0VF96 1302 aa3.32□□□□□ -1.88
CCDC88A-212ENST00000474059 CCDC189A1A4V9 331 aa3.31□□□□□ -1.88
CCDC88A-212ENST00000474059 GAGE7O76087 117 aa3.31□□□□□ -1.88
CCDC88A-212ENST00000474059 GAGE12FP0CL80 117 aa3.31□□□□□ -1.88
CCDC88A-212ENST00000474059 GAGE12GP0CL81 117 aa3.31□□□□□ -1.88
CCDC88A-212ENST00000474059 GAGE12IP0CL82 117 aa3.31□□□□□ -1.88
CCDC88A-212ENST00000474059 ACP5P13686 325 aa3.31□□□□□ -1.88
CCDC88A-212ENST00000474059 PNLIPRP1P54315 467 aa3.31□□□□□ -1.88
CCDC88A-212ENST00000474059 GAGE1Q13065 139 aa3.31□□□□□ -1.88
CCDC88A-212ENST00000474059 GAGE4Q13068 117 aa3.31□□□□□ -1.88
CCDC88A-212ENST00000474059 POSTNQ15063 836 aa3.31□□□□□ -1.88
CCDC88A-212ENST00000474059 RPE65Q16518 533 aa3.31□□□□□ -1.88
CCDC88A-212ENST00000474059 TBRG1Q3YBR2 411 aa3.31□□□□□ -1.88
CCDC88A-212ENST00000474059 TTC22Q5TAA0 569 aa3.31□□□□□ -1.88
CCDC88A-212ENST00000474059 ATPAF1Q5TC12 328 aaPredicted RBP3.31□□□□□ -1.88
CCDC88A-212ENST00000474059 ZNF772Q68DY9 489 aaPredicted RBP3.31□□□□□ -1.88
CCDC88A-212ENST00000474059 SULT6B1Q6IMI4 303 aa3.31□□□□□ -1.88
CCDC88A-212ENST00000474059 LIN54Q6MZP7 749 aa3.31□□□□□ -1.88
CCDC88A-212ENST00000474059 JMJD6Q6NYC1 403 aaPredicted RBP3.31□□□□□ -1.88
CCDC88A-212ENST00000474059 DSG4Q86SJ6 1040 aa3.31□□□□□ -1.88
CCDC88A-212ENST00000474059 FAM76AQ8TAV0 307 aa3.31□□□□□ -1.88
CCDC88A-212ENST00000474059 ARRDC2Q8TBH0 407 aa3.31□□□□□ -1.88
CCDC88A-212ENST00000474059 TRAPPC12Q8WVT3 735 aa3.31□□□□□ -1.88
CCDC88A-212ENST00000474059 PPM1EQ8WY54 764 aa3.31□□□□□ -1.88
CCDC88A-212ENST00000474059 TTC14Q96N46 770 aa3.31□□□□□ -1.88
CCDC88A-212ENST00000474059 PAGR1Q9BTK6 254 aa3.31□□□□□ -1.88
CCDC88A-212ENST00000474059 ISCA1Q9BUE6 129 aa3.31□□□□□ -1.88
CCDC88A-212ENST00000474059 DDX23Q9BUQ8 820 aaKnown RBP3.31□□□□□ -1.88
CCDC88A-212ENST00000474059 KLHL1Q9NR64 748 aa3.31□□□□□ -1.88
CCDC88A-212ENST00000474059 HERC5Q9UII4 1024 aaKnown RBP3.31□□□□□ -1.88
CCDC88A-212ENST00000474059 GPR52Q9Y2T5 361 aa3.31□□□□□ -1.88
CCDC88A-212ENST00000474059 DGKBQ9Y6T7 804 aa3.31□□□□□ -1.88
CCDC88A-212ENST00000474059 KRTAP16-1A8MUX0 517 aa3.3□□□□□ -1.88
CCDC88A-212ENST00000474059 FAM157AC9JC47 383 aa3.3□□□□□ -1.88
CCDC88A-212ENST00000474059 FAM72CH0Y354 149 aa3.3□□□□□ -1.88
CCDC88A-212ENST00000474059 IPO5O00410 1097 aaKnown RBP3.3□□□□□ -1.88
CCDC88A-212ENST00000474059 MID1O15344 667 aa3.3□□□□□ -1.88
CCDC88A-212ENST00000474059 CRLF1O75462 422 aa3.3□□□□□ -1.88
CCDC88A-212ENST00000474059 DHRS4L1P0CG22 281 aa3.3□□□□□ -1.88
CCDC88A-212ENST00000474059 CTPS1P17812 591 aa3.3□□□□□ -1.88
CCDC88A-212ENST00000474059 ALDH4A1P30038 563 aa3.3□□□□□ -1.88
CCDC88A-212ENST00000474059 PTPN9P43378 593 aa3.3□□□□□ -1.88
CCDC88A-212ENST00000474059 MTNR1AP48039 350 aa3.3□□□□□ -1.88
CCDC88A-212ENST00000474059 SLC18A2Q05940 514 aa3.3□□□□□ -1.88
CCDC88A-212ENST00000474059 PRKG1Q13976 671 aa3.3□□□□□ -1.88
CCDC88A-212ENST00000474059 OASLQ15646 514 aaKnown RBP3.3□□□□□ -1.88
CCDC88A-212ENST00000474059 ACCSLQ4AC99 568 aa3.3□□□□□ -1.88
CCDC88A-212ENST00000474059 LRRC24Q50LG9 513 aa3.3□□□□□ -1.88
CCDC88A-212ENST00000474059 FAM72AQ5TYM5 149 aa3.3□□□□□ -1.88
CCDC88A-212ENST00000474059 NCAPH2Q6IBW4 605 aa3.3□□□□□ -1.88
CCDC88A-212ENST00000474059 TANGO2Q6ICL3 276 aa3.3□□□□□ -1.88
CCDC88A-212ENST00000474059 FAM72DQ6L9T8 149 aa3.3□□□□□ -1.88
CCDC88A-212ENST00000474059 SLC26A9Q7LBE3 791 aa3.3□□□□□ -1.88
CCDC88A-212ENST00000474059 FAM72BQ86X60 149 aa3.3□□□□□ -1.88
CCDC88A-212ENST00000474059 ZNF354CQ86Y25 554 aa3.3□□□□□ -1.88
CCDC88A-212ENST00000474059 SUGP1Q8IWZ8 645 aaKnown RBP3.3□□□□□ -1.88
CCDC88A-212ENST00000474059 SMAP1Q8IYB5 467 aaPredicted RBP3.3□□□□□ -1.88
CCDC88A-212ENST00000474059 CPXCR1Q8N123 301 aa3.3□□□□□ -1.88
CCDC88A-212ENST00000474059 GALNT15Q8N3T1 639 aa3.3□□□□□ -1.88
CCDC88A-212ENST00000474059 FIG4Q92562 907 aa3.3□□□□□ -1.88
CCDC88A-212ENST00000474059 EVI5LQ96CN4 794 aa3.3□□□□□ -1.88
CCDC88A-212ENST00000474059 HERC2P3Q9BVR0 1158 aa3.3□□□□□ -1.88
CCDC88A-212ENST00000474059 CLPBQ9H078 707 aa3.3□□□□□ -1.88
CCDC88A-212ENST00000474059 ITM2CQ9NQX7 267 aa3.3□□□□□ -1.88
CCDC88A-212ENST00000474059 SLCO3A1Q9UIG8 710 aa3.3□□□□□ -1.88
CCDC88A-212ENST00000474059 BAG5Q9UL15 447 aa3.3□□□□□ -1.88
CCDC88A-212ENST00000474059 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP3.29□□□□□ -1.88
CCDC88A-212ENST00000474059 hDV102S1A0JD36 115 aa3.29□□□□□ -1.88
CCDC88A-212ENST00000474059 HSPA12AO43301 675 aa3.29□□□□□ -1.88
CCDC88A-212ENST00000474059 ITGA2BP08514 1039 aa3.29□□□□□ -1.88
CCDC88A-212ENST00000474059 CHN1P15882 459 aa3.29□□□□□ -1.88
CCDC88A-212ENST00000474059 CD53P19397 219 aa3.29□□□□□ -1.88
CCDC88A-212ENST00000474059 YWHAQP27348 245 aa3.29□□□□□ -1.88
CCDC88A-212ENST00000474059 LMO4P61968 165 aa3.29□□□□□ -1.88
CCDC88A-212ENST00000474059 BIRC3Q13489 604 aa3.29□□□□□ -1.88
CCDC88A-212ENST00000474059 CAPSQ13938 189 aa3.29□□□□□ -1.88
CCDC88A-212ENST00000474059 TAF5Q15542 800 aa3.29□□□□□ -1.88
CCDC88A-212ENST00000474059 TIGD6Q17RP2 521 aa3.29□□□□□ -1.88
CCDC88A-212ENST00000474059 HSP90AB4PQ58FF6 505 aa3.29□□□□□ -1.88
CCDC88A-212ENST00000474059 PAPPA-AS1Q5QFB9 102 aa3.29□□□□□ -1.88
CCDC88A-212ENST00000474059 ARHGAP11AQ6P4F7 1023 aa3.29□□□□□ -1.88
CCDC88A-212ENST00000474059 KLHL17Q6TDP4 642 aa3.29□□□□□ -1.88
CCDC88A-212ENST00000474059 NEK10Q6ZWH5 1172 aa3.29□□□□□ -1.88
CCDC88A-212ENST00000474059 SLC9B2Q86UD5 537 aa3.29□□□□□ -1.88
CCDC88A-212ENST00000474059 MON1AQ86VX9 555 aa3.29□□□□□ -1.88
CCDC88A-212ENST00000474059 CCDC117Q8IWD4 279 aaPredicted RBP3.29□□□□□ -1.88
CCDC88A-212ENST00000474059 MB21D2Q8IYB1 491 aaPredicted RBP3.29□□□□□ -1.88
CCDC88A-212ENST00000474059 SCAMP5Q8TAC9 235 aa3.29□□□□□ -1.88
CCDC88A-212ENST00000474059 OTUD7AQ8TE49 926 aaPredicted RBP3.29□□□□□ -1.88
CCDC88A-212ENST00000474059 TBC1D22AQ8WUA7 517 aa3.29□□□□□ -1.88
CCDC88A-212ENST00000474059 TANKQ92844 425 aa3.29□□□□□ -1.88
CCDC88A-212ENST00000474059 TRIM63Q969Q1 353 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms