RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 OGDHQ02218 1023 aa17.69■□□□□ 0.42
COL7A1-206ENST00000466591 RTP5Q14D33 572 aa17.69■□□□□ 0.42
COL7A1-206ENST00000466591 IRF4Q15306 451 aa17.69■□□□□ 0.42
COL7A1-206ENST00000466591 CYTH1Q15438 398 aa17.69■□□□□ 0.42
COL7A1-206ENST00000466591 BRAT1Q6PJG6 821 aa17.69■□□□□ 0.42
COL7A1-206ENST00000466591 MACC1Q6ZN28 852 aa17.69■□□□□ 0.42
COL7A1-206ENST00000466591 RFX8Q6ZV50 586 aa17.69■□□□□ 0.42
COL7A1-206ENST00000466591 APTXQ7Z2E3 356 aaKnown RBP17.69■□□□□ 0.42
COL7A1-206ENST00000466591 HID1Q8IV36 788 aa17.69■□□□□ 0.42
COL7A1-206ENST00000466591 RBFAQ8N0V3 343 aa17.69■□□□□ 0.42
COL7A1-206ENST00000466591 LSMEM2Q8N112 164 aa17.69■□□□□ 0.42
COL7A1-206ENST00000466591 CACTIN-AS1Q8N1I8 211 aa17.69■□□□□ 0.42
COL7A1-206ENST00000466591 HCAR2Q8TDS4 363 aa17.69■□□□□ 0.42
COL7A1-206ENST00000466591 NSMCE1Q8WV22 266 aa17.69■□□□□ 0.42
COL7A1-206ENST00000466591 FGF11Q92914 225 aa17.69■□□□□ 0.42
COL7A1-206ENST00000466591 ZNF641Q96N77 438 aaPredicted RBP17.69■□□□□ 0.42
COL7A1-206ENST00000466591 TUBGCP5Q96RT8 1024 aa17.69■□□□□ 0.42
COL7A1-206ENST00000466591 LGMNQ99538 433 aa17.69■□□□□ 0.42
COL7A1-206ENST00000466591 SNRNP25Q9BV90 132 aaKnown RBP17.69■□□□□ 0.42
COL7A1-206ENST00000466591 TMEM63CQ9P1W3 806 aa17.69■□□□□ 0.42
COL7A1-206ENST00000466591 LHX3Q9UBR4 397 aa17.69■□□□□ 0.42
COL7A1-206ENST00000466591 TMEM110-MUSTN1A8MSY1 372 aa17.68■□□□□ 0.42
COL7A1-206ENST00000466591 H3BRJ5 948 aa17.68■□□□□ 0.42
COL7A1-206ENST00000466591 SPINT1O43278 529 aa17.68■□□□□ 0.42
COL7A1-206ENST00000466591 PRAMEF11O60813 436 aa17.68■□□□□ 0.42
COL7A1-206ENST00000466591 PCCBP05166 539 aa17.68■□□□□ 0.42
COL7A1-206ENST00000466591 ITIH2P19823 946 aa17.68■□□□□ 0.42
COL7A1-206ENST00000466591 POLR2LP62875 67 aaKnown RBP17.68■□□□□ 0.42
COL7A1-206ENST00000466591 GABREP78334 506 aa17.68■□□□□ 0.42
COL7A1-206ENST00000466591 BCL2L1Q07817 233 aa17.68■□□□□ 0.42
COL7A1-206ENST00000466591 CCDC173Q0VFZ6 552 aa17.68■□□□□ 0.42
COL7A1-206ENST00000466591 COL9A2Q14055 689 aaPredicted RBP17.68■□□□□ 0.42
COL7A1-206ENST00000466591 ZNF235Q14590 738 aa17.68■□□□□ 0.42
COL7A1-206ENST00000466591 ELOCQ15369 112 aa17.68■□□□□ 0.42
COL7A1-206ENST00000466591 TCEA2Q15560 299 aa17.68■□□□□ 0.42
COL7A1-206ENST00000466591 UGP2Q16851 508 aa17.68■□□□□ 0.42
COL7A1-206ENST00000466591 PLEKHA7Q6IQ23 1121 aa17.68■□□□□ 0.42
COL7A1-206ENST00000466591 CRTC1Q6UUV9 634 aa17.68■□□□□ 0.42
COL7A1-206ENST00000466591 SRLQ86TD4 932 aa17.68■□□□□ 0.42
COL7A1-206ENST00000466591 BBS5Q8N3I7 341 aa17.68■□□□□ 0.42
COL7A1-206ENST00000466591 TPCN2Q8NHX9 752 aa17.68■□□□□ 0.42
COL7A1-206ENST00000466591 CENPTQ96BT3 561 aa17.68■□□□□ 0.42
COL7A1-206ENST00000466591 SLC39A8Q9C0K1 460 aa17.68■□□□□ 0.42
COL7A1-206ENST00000466591 HSD3B7Q9H2F3 369 aa17.68■□□□□ 0.42
COL7A1-206ENST00000466591 CAAP1Q9H8G2 361 aa17.68■□□□□ 0.42
COL7A1-206ENST00000466591 PCDH12Q9NPG4 1184 aa17.68■□□□□ 0.42
COL7A1-206ENST00000466591 GPR27Q9NS67 375 aa17.68■□□□□ 0.42
COL7A1-206ENST00000466591 WDR70Q9NW82 654 aa17.68■□□□□ 0.42
COL7A1-206ENST00000466591 GULP1Q9UBP9 304 aa17.68■□□□□ 0.42
COL7A1-206ENST00000466591 SALL4Q9UJQ4 1053 aa17.68■□□□□ 0.42
COL7A1-206ENST00000466591 PCDHB1Q9Y5F3 818 aa17.68■□□□□ 0.42
COL7A1-206ENST00000466591 A0A1W2PQC6 194 aa17.67■□□□□ 0.42
COL7A1-206ENST00000466591 GOLGA6L19H0YKK7 550 aa17.67■□□□□ 0.42
COL7A1-206ENST00000466591 TPP1O14773 563 aa17.67■□□□□ 0.42
COL7A1-206ENST00000466591 RASGRP1O95267 797 aa17.67■□□□□ 0.42
COL7A1-206ENST00000466591 MPOP05164 745 aa17.67■□□□□ 0.42
COL7A1-206ENST00000466591 ALPIP09923 528 aa17.67■□□□□ 0.42
COL7A1-206ENST00000466591 GZMAP12544 262 aa17.67■□□□□ 0.42
COL7A1-206ENST00000466591 C6P13671 934 aa17.67■□□□□ 0.42
COL7A1-206ENST00000466591 ERCC2P18074 760 aa17.67■□□□□ 0.42
COL7A1-206ENST00000466591 NFKBIAP25963 317 aa17.67■□□□□ 0.42
COL7A1-206ENST00000466591 MIPP30301 263 aa17.67■□□□□ 0.42
COL7A1-206ENST00000466591 EIF2S3P41091 472 aaKnown RBP17.67■□□□□ 0.42
COL7A1-206ENST00000466591 SSR1P43307 286 aaKnown RBP17.67■□□□□ 0.42
COL7A1-206ENST00000466591 LIG3P49916 1009 aa17.67■□□□□ 0.42
COL7A1-206ENST00000466591 RENBPP51606 427 aa17.67■□□□□ 0.42
COL7A1-206ENST00000466591 ZNF135P52742 658 aaPredicted RBP17.67■□□□□ 0.42
COL7A1-206ENST00000466591 EIF2B5Q13144 721 aaKnown RBP17.67■□□□□ 0.42
COL7A1-206ENST00000466591 CA9Q16790 459 aa17.67■□□□□ 0.42
COL7A1-206ENST00000466591 TMEM52BQ4KMG9 183 aa17.67■□□□□ 0.42
COL7A1-206ENST00000466591 BROXQ5VW32 411 aa17.67■□□□□ 0.42
COL7A1-206ENST00000466591 FOXR1Q6PIV2 292 aa17.67■□□□□ 0.42
COL7A1-206ENST00000466591 ENPP7Q6UWV6 458 aa17.67■□□□□ 0.42
COL7A1-206ENST00000466591 CAMK1DQ8IU85 385 aa17.67■□□□□ 0.42
COL7A1-206ENST00000466591 FSTL5Q8N475 847 aaPredicted RBP17.67■□□□□ 0.42
COL7A1-206ENST00000466591 HSPH1Q92598 858 aa17.67■□□□□ 0.42
COL7A1-206ENST00000466591 NAT6Q93015 286 aa17.67■□□□□ 0.42
COL7A1-206ENST00000466591 NAF1Q96HR8 494 aaKnown RBP17.67■□□□□ 0.42
COL7A1-206ENST00000466591 KCTD15Q96SI1 283 aaPredicted RBP17.67■□□□□ 0.42
COL7A1-206ENST00000466591 LRRC19Q9H756 370 aa17.67■□□□□ 0.42
COL7A1-206ENST00000466591 MBNL1Q9NR56 388 aaKnown RBP17.67■□□□□ 0.42
COL7A1-206ENST00000466591 SIRPGQ9P1W8 387 aa17.67■□□□□ 0.42
COL7A1-206ENST00000466591 KLQ9UEF7 1012 aa17.67■□□□□ 0.42
COL7A1-206ENST00000466591 ATP8A1Q9Y2Q0 1164 aa17.67■□□□□ 0.42
COL7A1-206ENST00000466591 TMEM191CA6NGB0 347 aa17.66■□□□□ 0.42
COL7A1-206ENST00000466591 CACNB4O00305 520 aaPredicted RBP17.66■□□□□ 0.42
COL7A1-206ENST00000466591 ELFN1P0C7U0 828 aa17.66■□□□□ 0.42
COL7A1-206ENST00000466591 SKILP12757 684 aa17.66■□□□□ 0.42
COL7A1-206ENST00000466591 HOXB3P14651 431 aaPredicted RBP17.66■□□□□ 0.42
COL7A1-206ENST00000466591 RBMS1P29558 406 aaKnown RBP17.66■□□□□ 0.42
COL7A1-206ENST00000466591 PEX5P50542 639 aa17.66■□□□□ 0.42
COL7A1-206ENST00000466591 SCNN1BP51168 640 aa17.66■□□□□ 0.42
COL7A1-206ENST00000466591 PCBP4P57723 403 aaKnown RBP17.66■□□□□ 0.42
COL7A1-206ENST00000466591 RFTN1Q14699 578 aaPredicted RBP17.66■□□□□ 0.42
COL7A1-206ENST00000466591 NFKBIBQ15653 356 aa17.66■□□□□ 0.42
COL7A1-206ENST00000466591 TBC1D25Q3MII6 688 aa17.66■□□□□ 0.42
COL7A1-206ENST00000466591 TPRG1LQ5T0D9 272 aa17.66■□□□□ 0.42
COL7A1-206ENST00000466591 GUSBP11Q6P575 273 aa17.66■□□□□ 0.42
COL7A1-206ENST00000466591 ZNF571Q7Z3V5 609 aaPredicted RBP17.66■□□□□ 0.42
COL7A1-206ENST00000466591 GKN2Q86XP6 184 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms