RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 KLF6Q99612 283 aaPredicted RBP23.21■■□□□ 1.31
PTPN4-208ENST00000460289 ANP32EQ9BTT0 268 aa23.21■■□□□ 1.31
PTPN4-208ENST00000460289 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP23.2■■□□□ 1.3
PTPN4-208ENST00000460289 POM121BA6NF01 834 aa23.2■■□□□ 1.3
PTPN4-208ENST00000460289 TMEM110-MUSTN1A8MSY1 372 aa23.2■■□□□ 1.3
PTPN4-208ENST00000460289 HYAL3O43820 417 aaPredicted RBP23.2■■□□□ 1.3
PTPN4-208ENST00000460289 MTA2O94776 668 aa23.2■■□□□ 1.3
PTPN4-208ENST00000460289 TOP3BO95985 862 aaKnown RBP23.2■■□□□ 1.3
PTPN4-208ENST00000460289 ITIH2P19823 946 aa23.2■■□□□ 1.3
PTPN4-208ENST00000460289 ZFYVE27Q5T4F4 411 aa23.2■■□□□ 1.3
PTPN4-208ENST00000460289 SLCO6A1Q86UG4 719 aa23.2■■□□□ 1.3
PTPN4-208ENST00000460289 CPNE8Q86YQ8 564 aa23.2■■□□□ 1.3
PTPN4-208ENST00000460289 CHCHD4Q8N4Q1 142 aa23.2■■□□□ 1.3
PTPN4-208ENST00000460289 PAF1Q8N7H5 531 aa23.2■■□□□ 1.3
PTPN4-208ENST00000460289 NEUROG3Q9Y4Z2 214 aa23.2■■□□□ 1.3
PTPN4-208ENST00000460289 MUSKO15146 869 aa23.19■■□□□ 1.3
PTPN4-208ENST00000460289 LDOC1O95751 146 aaPredicted RBP23.19■■□□□ 1.3
PTPN4-208ENST00000460289 PEX11BO96011 259 aa23.19■■□□□ 1.3
PTPN4-208ENST00000460289 ATXN1LP0C7T5 689 aaKnown RBP23.19■■□□□ 1.3
PTPN4-208ENST00000460289 SPINK2P20155 84 aa23.19■■□□□ 1.3
PTPN4-208ENST00000460289 PAFAH1B3Q15102 231 aaKnown RBP23.19■■□□□ 1.3
PTPN4-208ENST00000460289 MARC1Q5VT66 337 aa23.19■■□□□ 1.3
PTPN4-208ENST00000460289 SLC22A18ASQ8N1D0 253 aa23.19■■□□□ 1.3
PTPN4-208ENST00000460289 EID2Q8N6I1 236 aa23.19■■□□□ 1.3
PTPN4-208ENST00000460289 PNPLA1Q8N8W4 532 aa23.19■■□□□ 1.3
PTPN4-208ENST00000460289 TC2NQ8N9U0 490 aa23.19■■□□□ 1.3
PTPN4-208ENST00000460289 PCDH19Q8TAB3 1148 aa23.19■■□□□ 1.3
PTPN4-208ENST00000460289 RFFLQ8WZ73 363 aa23.19■■□□□ 1.3
PTPN4-208ENST00000460289 CENPTQ96BT3 561 aa23.19■■□□□ 1.3
PTPN4-208ENST00000460289 WRAP53Q9BUR4 548 aaKnown RBP23.19■■□□□ 1.3
PTPN4-208ENST00000460289 PCDH12Q9NPG4 1184 aa23.19■■□□□ 1.3
PTPN4-208ENST00000460289 TP53BP1Q12888 1972 aaPredicted RBP23.18■■□□□ 1.3
PTPN4-208ENST00000460289 TPRP12270 2363 aaKnown RBP23.18■■□□□ 1.3
PTPN4-208ENST00000460289 A0A1W2PQ67 120 aa23.18■■□□□ 1.3
PTPN4-208ENST00000460289 FAM221BA6H8Z2 402 aa23.18■■□□□ 1.3
PTPN4-208ENST00000460289 RIOK3O14730 519 aaKnown RBP23.18■■□□□ 1.3
PTPN4-208ENST00000460289 TCEAL1Q15170 157 aa23.18■■□□□ 1.3
PTPN4-208ENST00000460289 RALGPS1Q5JS13 557 aa23.18■■□□□ 1.3
PTPN4-208ENST00000460289 NCBP2-AS2Q69YL0 99 aa23.18■■□□□ 1.3
PTPN4-208ENST00000460289 ECHDC3Q96DC8 303 aa23.18■■□□□ 1.3
PTPN4-208ENST00000460289 MRFAP1L1Q96HT8 127 aa23.18■■□□□ 1.3
PTPN4-208ENST00000460289 NUDCD1Q96RS6 583 aa23.18■■□□□ 1.3
PTPN4-208ENST00000460289 RBSNQ9H1K0 784 aa23.18■■□□□ 1.3
PTPN4-208ENST00000460289 GPR27Q9NS67 375 aa23.18■■□□□ 1.3
PTPN4-208ENST00000460289 TOR4AQ9NXH8 423 aa23.18■■□□□ 1.3
PTPN4-208ENST00000460289 ATP8A1Q9Y2Q0 1164 aa23.18■■□□□ 1.3
PTPN4-208ENST00000460289 ACACBO00763 2458 aa23.17■■□□□ 1.3
PTPN4-208ENST00000460289 SPTY2D1-AS1A0A0U1RR47 76 aa23.17■■□□□ 1.3
PTPN4-208ENST00000460289 GOLGA8CPA6NN73 597 aa23.17■■□□□ 1.3
PTPN4-208ENST00000460289 TOR1BO14657 336 aa23.17■■□□□ 1.3
PTPN4-208ENST00000460289 DKK1O94907 266 aa23.17■■□□□ 1.3
PTPN4-208ENST00000460289 KDELR1P24390 212 aa23.17■■□□□ 1.3
PTPN4-208ENST00000460289 SLC1A1P43005 524 aa23.17■■□□□ 1.3
PTPN4-208ENST00000460289 MMP13P45452 471 aa23.17■■□□□ 1.3
PTPN4-208ENST00000460289 KANSL1Q7Z3B3 1105 aa23.17■■□□□ 1.3
PTPN4-208ENST00000460289 FAF2Q96CS3 445 aa23.17■■□□□ 1.3
PTPN4-208ENST00000460289 CNDP2Q96KP4 475 aaKnown RBP23.17■■□□□ 1.3
PTPN4-208ENST00000460289 SCUBE2Q9NQ36 999 aa23.17■■□□□ 1.3
PTPN4-208ENST00000460289 MSRB2Q9Y3D2 182 aa23.17■■□□□ 1.3
PTPN4-208ENST00000460289 CFAP69A5D8W1 941 aa23.16■■□□□ 1.3
PTPN4-208ENST00000460289 TRAFD1O14545 582 aaPredicted RBP23.16■■□□□ 1.3
PTPN4-208ENST00000460289 SDC3O75056 442 aa23.16■■□□□ 1.3
PTPN4-208ENST00000460289 CR2P20023 1033 aa23.16■■□□□ 1.3
PTPN4-208ENST00000460289 DGKAP23743 735 aa23.16■■□□□ 1.3
PTPN4-208ENST00000460289 GARSP41250 739 aaKnown RBP23.16■■□□□ 1.3
PTPN4-208ENST00000460289 MAGEA1P43355 309 aa23.16■■□□□ 1.3
PTPN4-208ENST00000460289 ZNF75DP51815 510 aa23.16■■□□□ 1.3
PTPN4-208ENST00000460289 PFN3P60673 137 aa23.16■■□□□ 1.3
PTPN4-208ENST00000460289 YPEL5P62699 121 aa23.16■■□□□ 1.3
PTPN4-208ENST00000460289 GALNT2Q10471 571 aa23.16■■□□□ 1.3
PTPN4-208ENST00000460289 PDE1CQ14123 709 aaPredicted RBP23.16■■□□□ 1.3
PTPN4-208ENST00000460289 PTK2BQ14289 1009 aa23.16■■□□□ 1.3
PTPN4-208ENST00000460289 IFI16Q16666 785 aaKnown RBP23.16■■□□□ 1.3
PTPN4-208ENST00000460289 HS1BP3Q53T59 392 aa23.16■■□□□ 1.3
PTPN4-208ENST00000460289 LRRC38Q5VT99 294 aa23.16■■□□□ 1.3
PTPN4-208ENST00000460289 TIGD7Q6NT04 549 aaPredicted RBP23.16■■□□□ 1.3
PTPN4-208ENST00000460289 ZSWIM9Q86XI8 627 aa23.16■■□□□ 1.3
PTPN4-208ENST00000460289 CCDC170Q8IYT3 715 aa23.16■■□□□ 1.3
PTPN4-208ENST00000460289 SPOCK2Q92563 424 aa23.16■■□□□ 1.3
PTPN4-208ENST00000460289 MGME1Q9BQP7 344 aa23.16■■□□□ 1.3
PTPN4-208ENST00000460289 DNAJC28Q9NX36 388 aa23.16■■□□□ 1.3
PTPN4-208ENST00000460289 KLK13Q9UKR3 277 aa23.16■■□□□ 1.3
PTPN4-208ENST00000460289 ENC1O14682 589 aa23.15■■□□□ 1.3
PTPN4-208ENST00000460289 MFSD11O43934 449 aa23.15■■□□□ 1.3
PTPN4-208ENST00000460289 SOCS5O75159 536 aa23.15■■□□□ 1.3
PTPN4-208ENST00000460289 MX2P20592 715 aa23.15■■□□□ 1.3
PTPN4-208ENST00000460289 CCNCP24863 283 aa23.15■■□□□ 1.3
PTPN4-208ENST00000460289 NFKBIAP25963 317 aa23.15■■□□□ 1.3
PTPN4-208ENST00000460289 MMP12P39900 470 aa23.15■■□□□ 1.3
PTPN4-208ENST00000460289 LIG3P49916 1009 aa23.15■■□□□ 1.3
PTPN4-208ENST00000460289 THOP1P52888 689 aa23.15■■□□□ 1.3
PTPN4-208ENST00000460289 HNRNPKP61978 463 aaKnown RBP eCLIP23.15■■□□□ 1.3
PTPN4-208ENST00000460289 FZD2Q14332 565 aa23.15■■□□□ 1.3
PTPN4-208ENST00000460289 LRRC14Q15048 493 aa23.15■■□□□ 1.3
PTPN4-208ENST00000460289 PARGQ86W56 976 aa23.15■■□□□ 1.3
PTPN4-208ENST00000460289 VSIG1Q86XK7 387 aa23.15■■□□□ 1.3
PTPN4-208ENST00000460289 SLC25A45Q8N413 288 aa23.15■■□□□ 1.3
PTPN4-208ENST00000460289 PGBD5Q8N414 524 aa23.15■■□□□ 1.3
PTPN4-208ENST00000460289 TEX26Q8N6G2 289 aa23.15■■□□□ 1.3
PTPN4-208ENST00000460289 RAPGEF5Q92565 580 aa23.15■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms