RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 KPNA5O15131 536 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 INSIG1O15503 277 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 SLC25A14O95258 325 aaPredicted RBP7.46□□□□□ -1.22
SYNE1-213ENST00000448038 CDH5P33151 784 aaPredicted RBP7.46□□□□□ -1.22
SYNE1-213ENST00000448038 PTGIRP43119 386 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 DGKGP49619 791 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 WNT7BP56706 349 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 RNASEH2BQ5TBB1 312 aaKnown RBP7.46□□□□□ -1.22
SYNE1-213ENST00000448038 FAM124AQ86V42 546 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 LEMD2Q8NC56 503 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 MAGEC3Q8TD91 643 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 KCTD4Q8WVF5 259 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 RBBP8Q99708 897 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 MYOCQ99972 504 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 MRPL46Q9H2W6 279 aaKnown RBP7.46□□□□□ -1.22
SYNE1-213ENST00000448038 SMOC2Q9H3U7 446 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 PNPLA8Q9NP80 782 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 VTI1BQ9UEU0 232 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 ZNHIT2Q9UHR6 403 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 ZMYM5Q9UJ78 669 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 PTGESO14684 152 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 PER2O15055 1255 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 FKBP9O95302 570 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 PIGNO95427 931 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 MAPK9P45984 424 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 KCNQ1P51787 676 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 ZNF132P52740 706 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 NAGLUP54802 743 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 GDF10P55107 478 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 KRT72Q14CN4 511 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 ATP6AP1LQ52LC2 224 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 FBXL22Q6P050 247 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 FKBP9P1Q75LS8 142 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 RBFAQ8N0V3 343 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 ABCB8Q9NUT2 735 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 HAO1Q9UJM8 370 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 PNMA8BQ9ULN7 279 aaPredicted RBP7.46□□□□□ -1.22
SYNE1-213ENST00000448038 TBC1D30Q9Y2I9 924 aa7.46□□□□□ -1.22
SYNE1-213ENST00000448038 QSOX1O00391 747 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 INPP4BO15327 924 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 FTH1P02794 183 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 ANXA5P08758 320 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 SLC20A2Q08357 652 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 CYLC2Q14093 348 aaPredicted RBP7.45□□□□□ -1.22
SYNE1-213ENST00000448038 TCEA2Q15560 299 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 FUT11Q495W5 492 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 MARCH8Q5T0T0 291 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 TAGAPQ8N103 731 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 FAM162AQ96A26 154 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 TEKT5Q96M29 485 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 SNX15Q9NRS6 342 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 IL1RAPL1Q9NZN1 696 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 PHF24Q9UPV7 400 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 TNPO3Q9Y5L0 923 aaKnown RBP7.45□□□□□ -1.22
SYNE1-213ENST00000448038 PALM2-AKAP2B1ALY0 433 aaPredicted RBP7.45□□□□□ -1.22
SYNE1-213ENST00000448038 NR5A2O00482 541 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 RPP40O75818 363 aaKnown RBP7.45□□□□□ -1.22
SYNE1-213ENST00000448038 TFE3P19532 575 aaPredicted RBP7.45□□□□□ -1.22
SYNE1-213ENST00000448038 SKIV2L2P42285 1042 aaKnown RBP7.45□□□□□ -1.22
SYNE1-213ENST00000448038 PIK3CGP48736 1102 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 ESRRGP62508 458 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 PGS1Q32NB8 556 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 RASIP1Q5U651 963 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 CATSPER2Q96P56 530 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 ASB2Q96Q27 587 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 CCDC3Q9BQI4 270 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 ING2Q9H160 280 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 PARVBQ9HBI1 364 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 SEMA4BQ9NPR2 832 aaPredicted RBP7.45□□□□□ -1.22
SYNE1-213ENST00000448038 CLDND1Q9NY35 253 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 POLG2Q9UHN1 485 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 VWA7Q9Y334 891 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 FAM32AQ9Y421 112 aaKnown RBP7.45□□□□□ -1.22
SYNE1-213ENST00000448038 TBC1D3DA0A087WVF3 549 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 TBC1D3IA0A087WXS9 549 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 TBC1D3EA0A087X179 549 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 TBC1D3KA0A087X1G2 549 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 TBC1D3FA6NER0 549 aaPredicted RBP7.45□□□□□ -1.22
SYNE1-213ENST00000448038 TBC1D3LB9A6J9 549 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 POP4O95707 220 aaKnown RBP7.45□□□□□ -1.22
SYNE1-213ENST00000448038 PRNPP04156 253 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 TBC1D3HP0C7X1 549 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 GABRB2P47870 512 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 AP1S1P61966 158 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 FASTKD3Q14CZ7 662 aaKnown RBP7.45□□□□□ -1.22
SYNE1-213ENST00000448038 CYP1B1Q16678 543 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 AASDHQ4L235 1098 aaPredicted RBP7.45□□□□□ -1.22
SYNE1-213ENST00000448038 AGKQ53H12 422 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 DCAF12L1Q5VU92 463 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 TBC1D3GQ6DHY5 549 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 TBC1D3CQ6IPX1 549 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 TBC1D3Q8IZP1 549 aaPredicted RBP7.45□□□□□ -1.22
SYNE1-213ENST00000448038 PTGR2Q8N8N7 351 aaPredicted RBP7.45□□□□□ -1.22
SYNE1-213ENST00000448038 KLHL23Q8NBE8 558 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 OR52K2Q8NGK3 314 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 ZNF398Q8TD17 642 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 RHOJQ9H4E5 214 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 RMND5AQ9H871 391 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 WDR41Q9HAD4 459 aa7.45□□□□□ -1.22
SYNE1-213ENST00000448038 KLC4Q9NSK0 619 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms