RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 PSMD8P48556 350 aa17.4■□□□□ 0.38
LIME1-202ENST00000444951 RAD51Q06609 339 aa17.4■□□□□ 0.38
LIME1-202ENST00000444951 ARSIQ5FYB1 569 aa17.4■□□□□ 0.38
LIME1-202ENST00000444951 N4BP2L1Q5TBK1 243 aaPredicted RBP17.4■□□□□ 0.38
LIME1-202ENST00000444951 PMS2CLQ68D20 193 aa17.4■□□□□ 0.38
LIME1-202ENST00000444951 ZNF572Q7Z3I7 529 aaPredicted RBP17.4■□□□□ 0.38
LIME1-202ENST00000444951 MMAAQ8IVH4 418 aaKnown RBP17.4■□□□□ 0.38
LIME1-202ENST00000444951 CEP112Q8N8E3 955 aa17.4■□□□□ 0.38
LIME1-202ENST00000444951 SPATA22Q8NHS9 363 aa17.4■□□□□ 0.38
LIME1-202ENST00000444951 RLN3Q8WXF3 142 aa17.4■□□□□ 0.38
LIME1-202ENST00000444951 NUDCD1Q96RS6 583 aa17.4■□□□□ 0.38
LIME1-202ENST00000444951 HEPHQ9BQS7 1158 aa17.4■□□□□ 0.38
LIME1-202ENST00000444951 IL36AQ9UHA7 158 aa17.4■□□□□ 0.38
LIME1-202ENST00000444951 FEZ2Q9UHY8 353 aaPredicted RBP17.4■□□□□ 0.38
LIME1-202ENST00000444951 FRYQ5TBA9 3013 aa17.4■□□□□ 0.38
LIME1-202ENST00000444951 TNRC6BQ9UPQ9 1833 aaKnown RBP17.4■□□□□ 0.38
LIME1-202ENST00000444951 PATE3B3GLJ2 98 aa17.39■□□□□ 0.37
LIME1-202ENST00000444951 TTI1O43156 1089 aa17.39■□□□□ 0.37
LIME1-202ENST00000444951 LEFTY1O75610 366 aa17.39■□□□□ 0.37
LIME1-202ENST00000444951 RHOBTB1O94844 696 aa17.39■□□□□ 0.37
LIME1-202ENST00000444951 METTL18O95568 372 aa17.39■□□□□ 0.37
LIME1-202ENST00000444951 POP4O95707 220 aaKnown RBP17.39■□□□□ 0.37
LIME1-202ENST00000444951 IL1BP01584 269 aa17.39■□□□□ 0.37
LIME1-202ENST00000444951 PTGIRP43119 386 aa17.39■□□□□ 0.37
LIME1-202ENST00000444951 NSUN2Q08J23 767 aaKnown RBP eCLIP17.39■□□□□ 0.37
LIME1-202ENST00000444951 CAMK2GQ13555 558 aaPredicted RBP17.39■□□□□ 0.37
LIME1-202ENST00000444951 ELAVL3Q14576 367 aaKnown RBP17.39■□□□□ 0.37
LIME1-202ENST00000444951 PCSK7Q16549 785 aa17.39■□□□□ 0.37
LIME1-202ENST00000444951 P3H1Q32P28 736 aa17.39■□□□□ 0.37
LIME1-202ENST00000444951 SYCP2LQ5T4T6 812 aa17.39■□□□□ 0.37
LIME1-202ENST00000444951 KDELC2Q7Z4H8 507 aa17.39■□□□□ 0.37
LIME1-202ENST00000444951 CAMK1DQ8IU85 385 aa17.39■□□□□ 0.37
LIME1-202ENST00000444951 PGBD3Q8N328 593 aa17.39■□□□□ 0.37
LIME1-202ENST00000444951 ARRDC2Q8TBH0 407 aa17.39■□□□□ 0.37
LIME1-202ENST00000444951 PDCD6IPQ8WUM4 868 aaKnown RBP17.39■□□□□ 0.37
LIME1-202ENST00000444951 HMGB4Q8WW32 186 aa17.39■□□□□ 0.37
LIME1-202ENST00000444951 RTP4Q96DX8 246 aa17.39■□□□□ 0.37
LIME1-202ENST00000444951 NSMCE3Q96MG7 304 aa17.39■□□□□ 0.37
LIME1-202ENST00000444951 RUNDC3BQ96NL0 473 aa17.39■□□□□ 0.37
LIME1-202ENST00000444951 FAM129BQ96TA1 746 aa17.39■□□□□ 0.37
LIME1-202ENST00000444951 TRIM51Q9BSJ1 452 aa17.39■□□□□ 0.37
LIME1-202ENST00000444951 EDEM2Q9BV94 578 aa17.39■□□□□ 0.37
LIME1-202ENST00000444951 SLC25A51Q9H1U9 297 aa17.39■□□□□ 0.37
LIME1-202ENST00000444951 GBA3Q9H227 469 aa17.39■□□□□ 0.37
LIME1-202ENST00000444951 PCYOX1Q9UHG3 505 aa17.39■□□□□ 0.37
LIME1-202ENST00000444951 PCDHGC4Q9Y5F7 938 aa17.39■□□□□ 0.37
LIME1-202ENST00000444951 USP24Q9UPU5 2620 aa17.39■□□□□ 0.37
LIME1-202ENST00000444951 LNP1A1A4G5 178 aa17.38■□□□□ 0.37
LIME1-202ENST00000444951 KPNA3O00505 521 aaPredicted RBP17.38■□□□□ 0.37
LIME1-202ENST00000444951 RNASEH1O60930 286 aaKnown RBP17.38■□□□□ 0.37
LIME1-202ENST00000444951 PMPCBO75439 489 aa17.38■□□□□ 0.37
LIME1-202ENST00000444951 MT-CYBP00156 380 aaPredicted RBP17.38■□□□□ 0.37
LIME1-202ENST00000444951 UGT2B4P06133 528 aa17.38■□□□□ 0.37
LIME1-202ENST00000444951 CTSLP07711 333 aa17.38■□□□□ 0.37
LIME1-202ENST00000444951 CR2P20023 1033 aa17.38■□□□□ 0.37
LIME1-202ENST00000444951 AP1S1P61966 158 aa17.38■□□□□ 0.37
LIME1-202ENST00000444951 BCL2L1Q07817 233 aa17.38■□□□□ 0.37
LIME1-202ENST00000444951 GPS1Q13098 491 aa17.38■□□□□ 0.37
LIME1-202ENST00000444951 PRPSAP1Q14558 356 aa17.38■□□□□ 0.37
LIME1-202ENST00000444951 USP39Q53GS9 565 aaKnown RBP17.38■□□□□ 0.37
LIME1-202ENST00000444951 NCEH1Q6PIU2 408 aa17.38■□□□□ 0.37
LIME1-202ENST00000444951 DSG4Q86SJ6 1040 aa17.38■□□□□ 0.37
LIME1-202ENST00000444951 OR2T3Q8NH03 318 aa17.38■□□□□ 0.37
LIME1-202ENST00000444951 IMP4Q96G21 291 aaKnown RBP17.38■□□□□ 0.37
LIME1-202ENST00000444951 ATP13A3Q9H7F0 1226 aa17.38■□□□□ 0.37
LIME1-202ENST00000444951 PCDH9Q9HC56 1237 aa17.38■□□□□ 0.37
LIME1-202ENST00000444951 POLMQ9NP87 494 aaPredicted RBP17.38■□□□□ 0.37
LIME1-202ENST00000444951 RAB6BQ9NRW1 208 aa17.38■□□□□ 0.37
LIME1-202ENST00000444951 PAK5Q9P286 719 aa17.38■□□□□ 0.37
LIME1-202ENST00000444951 BCCIPQ9P287 314 aaKnown RBP eCLIP17.38■□□□□ 0.37
LIME1-202ENST00000444951 ASIC3Q9UHC3 531 aa17.38■□□□□ 0.37
LIME1-202ENST00000444951 SARDHQ9UL12 918 aa17.38■□□□□ 0.37
LIME1-202ENST00000444951 WASF2Q9Y6W5 498 aa17.38■□□□□ 0.37
LIME1-202ENST00000444951 PLXND1Q9Y4D7 1925 aa17.37■□□□□ 0.37
LIME1-202ENST00000444951 RAD51CO43502 376 aa17.37■□□□□ 0.37
LIME1-202ENST00000444951 MMP2P08253 660 aa17.37■□□□□ 0.37
LIME1-202ENST00000444951 SERPINF2P08697 491 aa17.37■□□□□ 0.37
LIME1-202ENST00000444951 PMLP29590 882 aa17.37■□□□□ 0.37
LIME1-202ENST00000444951 CSNK1DP48730 415 aa17.37■□□□□ 0.37
LIME1-202ENST00000444951 LMAN1P49257 510 aa17.37■□□□□ 0.37
LIME1-202ENST00000444951 METAP1P53582 386 aa17.37■□□□□ 0.37
LIME1-202ENST00000444951 COPAP53621 1224 aa17.37■□□□□ 0.37
LIME1-202ENST00000444951 BASP1P80723 227 aaKnown RBP17.37■□□□□ 0.37
LIME1-202ENST00000444951 SKOR1P84550 965 aa17.37■□□□□ 0.37
LIME1-202ENST00000444951 IHHQ14623 411 aa17.37■□□□□ 0.37
LIME1-202ENST00000444951 PARP6Q2NL67 630 aa17.37■□□□□ 0.37
LIME1-202ENST00000444951 CFAP58Q5T655 872 aa17.37■□□□□ 0.37
LIME1-202ENST00000444951 ZNF776Q68DI1 518 aaPredicted RBP17.37■□□□□ 0.37
LIME1-202ENST00000444951 KIAA1324Q6UXG2 1013 aaKnown RBP17.37■□□□□ 0.37
LIME1-202ENST00000444951 GDPD4Q6W3E5 623 aa17.37■□□□□ 0.37
LIME1-202ENST00000444951 PRPF39Q86UA1 669 aaKnown RBP17.37■□□□□ 0.37
LIME1-202ENST00000444951 JAMLQ86YT9 394 aa17.37■□□□□ 0.37
LIME1-202ENST00000444951 TMPRSS6Q8IU80 811 aa17.37■□□□□ 0.37
LIME1-202ENST00000444951 PLPP6Q8IY26 295 aa17.37■□□□□ 0.37
LIME1-202ENST00000444951 NOA1Q8NC60 698 aaKnown RBP17.37■□□□□ 0.37
LIME1-202ENST00000444951 LRRN4CLQ8ND94 238 aa17.37■□□□□ 0.37
LIME1-202ENST00000444951 PIP4K2CQ8TBX8 421 aa17.37■□□□□ 0.37
LIME1-202ENST00000444951 GANCQ8TET4 914 aa17.37■□□□□ 0.37
LIME1-202ENST00000444951 OXNAD1Q96HP4 312 aaPredicted RBP17.37■□□□□ 0.37
LIME1-202ENST00000444951 KLHL32Q96NJ5 620 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms