RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 MUSKO15146 869 aa15.33■□□□□ 0.04
LIMS3-201ENST00000437679 RAD51BO15315 384 aa15.33■□□□□ 0.04
LIMS3-201ENST00000437679 SPOPO43791 374 aa15.33■□□□□ 0.04
LIMS3-201ENST00000437679 MMP20O60882 483 aa15.33■□□□□ 0.04
LIMS3-201ENST00000437679 CBFA2T3O75081 653 aa15.33■□□□□ 0.04
LIMS3-201ENST00000437679 TM7SF2O76062 418 aa15.33■□□□□ 0.04
LIMS3-201ENST00000437679 PEX11BO96011 259 aa15.33■□□□□ 0.04
LIMS3-201ENST00000437679 ITIH2P19823 946 aa15.33■□□□□ 0.04
LIMS3-201ENST00000437679 MX2P20592 715 aa15.33■□□□□ 0.04
LIMS3-201ENST00000437679 GARSP41250 739 aaKnown RBP15.33■□□□□ 0.04
LIMS3-201ENST00000437679 MMP13P45452 471 aa15.33■□□□□ 0.04
LIMS3-201ENST00000437679 POLR2LP62875 67 aaKnown RBP15.33■□□□□ 0.04
LIMS3-201ENST00000437679 FAM193AP78312 1265 aa15.33■□□□□ 0.04
LIMS3-201ENST00000437679 GALNT2Q10471 571 aa15.33■□□□□ 0.04
LIMS3-201ENST00000437679 FOXC1Q12948 553 aa15.33■□□□□ 0.04
LIMS3-201ENST00000437679 IFI16Q16666 785 aaKnown RBP15.33■□□□□ 0.04
LIMS3-201ENST00000437679 TMEM52BQ4KMG9 183 aa15.33■□□□□ 0.04
LIMS3-201ENST00000437679 LRRC38Q5VT99 294 aa15.33■□□□□ 0.04
LIMS3-201ENST00000437679 TIGD7Q6NT04 549 aaPredicted RBP15.33■□□□□ 0.04
LIMS3-201ENST00000437679 GCNT7Q6ZNI0 430 aa15.33■□□□□ 0.04
LIMS3-201ENST00000437679 PTAR1Q7Z6K3 402 aaPredicted RBP15.33■□□□□ 0.04
LIMS3-201ENST00000437679 DCP2Q8IU60 420 aaKnown RBP15.33■□□□□ 0.04
LIMS3-201ENST00000437679 RHOT1Q8IXI2 618 aa15.33■□□□□ 0.04
LIMS3-201ENST00000437679 DENND6BQ8NEG7 585 aa15.33■□□□□ 0.04
LIMS3-201ENST00000437679 OR13H1Q8NG92 308 aa15.33■□□□□ 0.04
LIMS3-201ENST00000437679 TRAF3IP1Q8TDR0 691 aaPredicted RBP15.33■□□□□ 0.04
LIMS3-201ENST00000437679 RNF157Q96PX1 679 aa15.33■□□□□ 0.04
LIMS3-201ENST00000437679 WRAP53Q9BUR4 548 aaKnown RBP15.33■□□□□ 0.04
LIMS3-201ENST00000437679 MAK16Q9BXY0 300 aaKnown RBP15.33■□□□□ 0.04
LIMS3-201ENST00000437679 PCDH12Q9NPG4 1184 aa15.33■□□□□ 0.04
LIMS3-201ENST00000437679 SCUBE2Q9NQ36 999 aa15.33■□□□□ 0.04
LIMS3-201ENST00000437679 ANGPTL2Q9UKU9 493 aa15.33■□□□□ 0.04
LIMS3-201ENST00000437679 BTBD3Q9Y2F9 522 aa15.33■□□□□ 0.04
LIMS3-201ENST00000437679 ZNF487B1APH4 448 aa15.32■□□□□ 0.04
LIMS3-201ENST00000437679 KRT1P04264 644 aa15.32■□□□□ 0.04
LIMS3-201ENST00000437679 TNNT1P13805 278 aa15.32■□□□□ 0.04
LIMS3-201ENST00000437679 EPHA8P29322 1005 aaPredicted RBP15.32■□□□□ 0.04
LIMS3-201ENST00000437679 RABIFP47224 123 aa15.32■□□□□ 0.04
LIMS3-201ENST00000437679 SHBQ15464 509 aa15.32■□□□□ 0.04
LIMS3-201ENST00000437679 RALGPS1Q5JS13 557 aa15.32■□□□□ 0.04
LIMS3-201ENST00000437679 KYAT3Q6YP21 454 aaKnown RBP15.32■□□□□ 0.04
LIMS3-201ENST00000437679 Q6ZSR6 202 aa15.32■□□□□ 0.04
LIMS3-201ENST00000437679 GATAD2AQ86YP4 633 aa15.32■□□□□ 0.04
LIMS3-201ENST00000437679 PQLC3Q8N755 202 aa15.32■□□□□ 0.04
LIMS3-201ENST00000437679 SAP25Q8TEE9 199 aa15.32■□□□□ 0.04
LIMS3-201ENST00000437679 BMFQ96LC9 184 aa15.32■□□□□ 0.04
LIMS3-201ENST00000437679 ZNF830Q96NB3 372 aaPredicted RBP15.32■□□□□ 0.04
LIMS3-201ENST00000437679 NUDCD1Q96RS6 583 aa15.32■□□□□ 0.04
LIMS3-201ENST00000437679 MGME1Q9BQP7 344 aa15.32■□□□□ 0.04
LIMS3-201ENST00000437679 HAUS2Q9NVX0 235 aa15.32■□□□□ 0.04
LIMS3-201ENST00000437679 DDX56Q9NY93 547 aaKnown RBP15.32■□□□□ 0.04
LIMS3-201ENST00000437679 ATP8A1Q9Y2Q0 1164 aa15.32■□□□□ 0.04
LIMS3-201ENST00000437679 HYOU1Q9Y4L1 999 aa15.32■□□□□ 0.04
LIMS3-201ENST00000437679 EPN1Q9Y6I3 576 aaPredicted RBP15.32■□□□□ 0.04
LIMS3-201ENST00000437679 A0A0A6YYK5 440 aaPredicted RBP15.31■□□□□ 0.04
LIMS3-201ENST00000437679 A0A1W2PQ67 120 aa15.31■□□□□ 0.04
LIMS3-201ENST00000437679 TTC24A2A3L6 582 aaPredicted RBP15.31■□□□□ 0.04
LIMS3-201ENST00000437679 POM121BA6NF01 834 aa15.31■□□□□ 0.04
LIMS3-201ENST00000437679 SOWAHDA6NJG2 315 aa15.31■□□□□ 0.04
LIMS3-201ENST00000437679 RIOK3O14730 519 aaKnown RBP15.31■□□□□ 0.04
LIMS3-201ENST00000437679 NEBLO76041 1014 aa15.31■□□□□ 0.04
LIMS3-201ENST00000437679 NDUFA10O95299 355 aa15.31■□□□□ 0.04
LIMS3-201ENST00000437679 TRIM16O95361 564 aa15.31■□□□□ 0.04
LIMS3-201ENST00000437679 MAP3K6O95382 1288 aa15.31■□□□□ 0.04
LIMS3-201ENST00000437679 CR2P20023 1033 aa15.31■□□□□ 0.04
LIMS3-201ENST00000437679 COMTP21964 271 aa15.31■□□□□ 0.04
LIMS3-201ENST00000437679 FECHP22830 423 aa15.31■□□□□ 0.04
LIMS3-201ENST00000437679 CCNCP24863 283 aa15.31■□□□□ 0.04
LIMS3-201ENST00000437679 HADHBP55084 474 aaKnown RBP15.31■□□□□ 0.04
LIMS3-201ENST00000437679 MAXP61244 160 aa15.31■□□□□ 0.04
LIMS3-201ENST00000437679 GBE1Q04446 702 aa15.31■□□□□ 0.04
LIMS3-201ENST00000437679 ITKQ08881 620 aa15.31■□□□□ 0.04
LIMS3-201ENST00000437679 GLRX5Q86SX6 157 aa15.31■□□□□ 0.04
LIMS3-201ENST00000437679 ZSWIM9Q86XI8 627 aa15.31■□□□□ 0.04
LIMS3-201ENST00000437679 VSIG1Q86XK7 387 aa15.31■□□□□ 0.04
LIMS3-201ENST00000437679 PGBD5Q8N414 524 aa15.31■□□□□ 0.04
LIMS3-201ENST00000437679 TEX26Q8N6G2 289 aa15.31■□□□□ 0.04
LIMS3-201ENST00000437679 BAHD1Q8TBE0 780 aaPredicted RBP15.31■□□□□ 0.04
LIMS3-201ENST00000437679 ECHDC3Q96DC8 303 aa15.31■□□□□ 0.04
LIMS3-201ENST00000437679 TSGA13Q96PP4 275 aa15.31■□□□□ 0.04
LIMS3-201ENST00000437679 KLF6Q99612 283 aaPredicted RBP15.31■□□□□ 0.04
LIMS3-201ENST00000437679 NT5MQ9NPB1 228 aa15.31■□□□□ 0.04
LIMS3-201ENST00000437679 APOBEC2Q9Y235 224 aaKnown RBP15.31■□□□□ 0.04
LIMS3-201ENST00000437679 TDRD6O60522 2096 aaKnown RBP15.31■□□□□ 0.04
LIMS3-201ENST00000437679 TRAFD1O14545 582 aaPredicted RBP15.3■□□□□ 0.04
LIMS3-201ENST00000437679 MATN3O15232 486 aa15.3■□□□□ 0.04
LIMS3-201ENST00000437679 LZTS3O60299 673 aaPredicted RBP15.3■□□□□ 0.04
LIMS3-201ENST00000437679 SOCS5O75159 536 aa15.3■□□□□ 0.04
LIMS3-201ENST00000437679 FTH1P19P0C7X4 201 aa15.3■□□□□ 0.04
LIMS3-201ENST00000437679 ZFXP17010 805 aaPredicted RBP15.3■□□□□ 0.04
LIMS3-201ENST00000437679 NFKBIAP25963 317 aa15.3■□□□□ 0.04
LIMS3-201ENST00000437679 CDC25BP30305 580 aa15.3■□□□□ 0.04
LIMS3-201ENST00000437679 MMP12P39900 470 aa15.3■□□□□ 0.04
LIMS3-201ENST00000437679 SHC2P98077 582 aa15.3■□□□□ 0.04
LIMS3-201ENST00000437679 BNIP3Q12983 259 aa15.3■□□□□ 0.04
LIMS3-201ENST00000437679 SLC22A18ASQ8N1D0 253 aa15.3■□□□□ 0.04
LIMS3-201ENST00000437679 CCNYQ8ND76 341 aa15.3■□□□□ 0.04
LIMS3-201ENST00000437679 PDCD6IPQ8WUM4 868 aaKnown RBP15.3■□□□□ 0.04
LIMS3-201ENST00000437679 MAML1Q92585 1016 aa15.3■□□□□ 0.04
LIMS3-201ENST00000437679 FATE1Q969F0 183 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms