RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 KATNA1O75449 491 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 AP2A1O95782 977 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 ITGB1P05556 798 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 GFAPP14136 432 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 ALDH4A1P30038 563 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 ENTPD1P49961 510 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 ARSDP51689 593 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 IST1P53990 364 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 CREB5Q02930 508 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 SNAPC2Q13487 334 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 DDR2Q16832 855 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 PKDCCQ504Y2 493 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 NOTUMQ6P988 496 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 ANKRD13AQ8IZ07 590 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 TSPAN14Q8NG11 270 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 MAGEE2Q8TD90 523 aaPredicted RBP8.72□□□□□ -1.01
USP40-203ENST00000427112 HDAC10Q969S8 669 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 LRRC39Q96DD0 335 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 SNX27Q96L92 541 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 MPHOSPH6Q99547 160 aaKnown RBP8.72□□□□□ -1.01
USP40-203ENST00000427112 SPON2Q9BUD6 331 aa8.72□□□□□ -1.01
USP40-203ENST00000427112 TCAF2A6NFQ2 919 aa8.71□□□□□ -1.01
USP40-203ENST00000427112 UBXN8O00124 270 aa8.71□□□□□ -1.01
USP40-203ENST00000427112 PSMD12O00232 456 aaPredicted RBP8.71□□□□□ -1.01
USP40-203ENST00000427112 NOL3O60936 208 aaKnown RBP8.71□□□□□ -1.01
USP40-203ENST00000427112 SMIM10L2AP0DMW4 78 aa8.71□□□□□ -1.01
USP40-203ENST00000427112 SMIM10L2BP0DMW5 78 aa8.71□□□□□ -1.01
USP40-203ENST00000427112 BMP1P13497 986 aa8.71□□□□□ -1.01
USP40-203ENST00000427112 GRIK1P39086 918 aa8.71□□□□□ -1.01
USP40-203ENST00000427112 GRB7Q14451 532 aa8.71□□□□□ -1.01
USP40-203ENST00000427112 MGAT5BQ3V5L5 792 aa8.71□□□□□ -1.01
USP40-203ENST00000427112 LIPMQ5VYY2 423 aa8.71□□□□□ -1.01
USP40-203ENST00000427112 PDZD8Q8NEN9 1154 aa8.71□□□□□ -1.01
USP40-203ENST00000427112 RIN3Q8TB24 985 aa8.71□□□□□ -1.01
USP40-203ENST00000427112 SLC10A4Q96EP9 437 aa8.71□□□□□ -1.01
USP40-203ENST00000427112 ITCHQ96J02 903 aa8.71□□□□□ -1.01
USP40-203ENST00000427112 OLFM3Q96PB7 478 aa8.71□□□□□ -1.01
USP40-203ENST00000427112 SLC39A8Q9C0K1 460 aa8.71□□□□□ -1.01
USP40-203ENST00000427112 MID1IP1Q9NPA3 183 aa8.71□□□□□ -1.01
USP40-203ENST00000427112 TMLHEQ9NVH6 421 aa8.71□□□□□ -1.01
USP40-203ENST00000427112 DNAJC28Q9NX36 388 aa8.71□□□□□ -1.01
USP40-203ENST00000427112 STK39Q9UEW8 545 aa8.71□□□□□ -1.01
USP40-203ENST00000427112 TOR1BO14657 336 aa8.71□□□□□ -1.01
USP40-203ENST00000427112 HLA-DQB2P05538 268 aa8.71□□□□□ -1.01
USP40-203ENST00000427112 MAGP20916 626 aa8.71□□□□□ -1.01
USP40-203ENST00000427112 EDNRBP24530 442 aa8.71□□□□□ -1.01
USP40-203ENST00000427112 NOS2P35228 1153 aa8.71□□□□□ -1.01
USP40-203ENST00000427112 IREB2P48200 963 aaKnown RBP8.71□□□□□ -1.01
USP40-203ENST00000427112 NR2C2P49116 596 aa8.71□□□□□ -1.01
USP40-203ENST00000427112 DIO3P55073 304 aa8.71□□□□□ -1.01
USP40-203ENST00000427112 LAPTM5Q13571 262 aa8.71□□□□□ -1.01
USP40-203ENST00000427112 TBCELQ5QJ74 424 aa8.71□□□□□ -1.01
USP40-203ENST00000427112 TSTD2Q5T7W7 516 aa8.71□□□□□ -1.01
USP40-203ENST00000427112 C16orf89Q6UX73 402 aa8.71□□□□□ -1.01
USP40-203ENST00000427112 PRR23BQ6ZRT6 265 aa8.71□□□□□ -1.01
USP40-203ENST00000427112 EFHBQ8N7U6 833 aa8.71□□□□□ -1.01
USP40-203ENST00000427112 RTKNQ9BST9 563 aa8.71□□□□□ -1.01
USP40-203ENST00000427112 DUSP16Q9BY84 665 aa8.71□□□□□ -1.01
USP40-203ENST00000427112 ADNPQ9H2P0 1102 aa8.71□□□□□ -1.01
USP40-203ENST00000427112 MROH8Q9H579 483 aa8.71□□□□□ -1.01
USP40-203ENST00000427112 FBXO5Q9UKT4 447 aa8.71□□□□□ -1.01
USP40-203ENST00000427112 RAP2CQ9Y3L5 183 aa8.71□□□□□ -1.01
USP40-203ENST00000427112 DGKBQ9Y6T7 804 aa8.71□□□□□ -1.01
USP40-203ENST00000427112 U3KQV3 271 aa8.71□□□□□ -1.01
USP40-203ENST00000427112 GIPC1O14908 333 aa8.71□□□□□ -1.02
USP40-203ENST00000427112 NRP2O60462 931 aa8.71□□□□□ -1.02
USP40-203ENST00000427112 OXTRP30559 389 aa8.71□□□□□ -1.02
USP40-203ENST00000427112 GRK4P32298 578 aa8.71□□□□□ -1.02
USP40-203ENST00000427112 HARS2P49590 506 aaKnown RBP8.71□□□□□ -1.02
USP40-203ENST00000427112 YWHAHQ04917 246 aaPredicted RBP8.71□□□□□ -1.02
USP40-203ENST00000427112 C11orf91Q3C1V1 193 aa8.71□□□□□ -1.02
USP40-203ENST00000427112 SPANXN3Q5MJ09 141 aa8.71□□□□□ -1.02
USP40-203ENST00000427112 SMYD5Q6GMV2 418 aa8.71□□□□□ -1.02
USP40-203ENST00000427112 TAPT1Q6NXT6 567 aa8.71□□□□□ -1.02
USP40-203ENST00000427112 FASTKD5Q7L8L6 764 aaKnown RBP8.71□□□□□ -1.02
USP40-203ENST00000427112 CUZD1Q86UP6 607 aa8.71□□□□□ -1.02
USP40-203ENST00000427112 TBATAQ96M53 351 aa8.71□□□□□ -1.02
USP40-203ENST00000427112 SIKE1Q9BRV8 207 aa8.71□□□□□ -1.02
USP40-203ENST00000427112 NDEL1Q9GZM8 345 aa8.71□□□□□ -1.02
USP40-203ENST00000427112 CCDC90BQ9GZT6 254 aa8.71□□□□□ -1.02
USP40-203ENST00000427112 PAIP1Q9H074 479 aaKnown RBP8.71□□□□□ -1.02
USP40-203ENST00000427112 RNF11Q9Y3C5 154 aa8.71□□□□□ -1.02
USP40-203ENST00000427112 USP3Q9Y6I4 520 aa8.71□□□□□ -1.02
USP40-203ENST00000427112 SDHDO14521 159 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 CNTN5O94779 1100 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 SNAI1O95863 264 aaPredicted RBP8.7□□□□□ -1.02
USP40-203ENST00000427112 PRDX3P30048 256 aaKnown RBP8.7□□□□□ -1.02
USP40-203ENST00000427112 GJA5P36382 358 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 RPL5P46777 297 aaKnown RBP8.7□□□□□ -1.02
USP40-203ENST00000427112 GSTA3Q16772 222 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 C18orf21Q32NC0 220 aaPredicted RBP8.7□□□□□ -1.02
USP40-203ENST00000427112 CCDC153Q494R4 210 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 REP15Q6BDI9 236 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 NEPROQ6NW34 567 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 TTC33Q6PID6 262 aaPredicted RBP8.7□□□□□ -1.02
USP40-203ENST00000427112 ZMIZ2Q8NF64 920 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 OR13C4Q8NGS5 318 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 FAM81AQ8TBF8 368 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 ITFG2Q969R8 447 aa8.7□□□□□ -1.02
USP40-203ENST00000427112 TNIP3Q96KP6 325 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms