RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 SSTR1P30872 391 aa17.27■□□□□ 0.35
CCDC28B-202ENST00000421922 SOX9P48436 509 aa17.27■□□□□ 0.35
CCDC28B-202ENST00000421922 TRAF2Q12933 501 aa17.27■□□□□ 0.35
CCDC28B-202ENST00000421922 STAT4Q14765 748 aa17.27■□□□□ 0.35
CCDC28B-202ENST00000421922 KLHL38Q2WGJ6 581 aa17.27■□□□□ 0.35
CCDC28B-202ENST00000421922 SPANXN3Q5MJ09 141 aa17.27■□□□□ 0.35
CCDC28B-202ENST00000421922 CEP85LQ5SZL2 805 aa17.27■□□□□ 0.35
CCDC28B-202ENST00000421922 ARMC3Q5W041 872 aa17.27■□□□□ 0.35
CCDC28B-202ENST00000421922 SERPINA13PQ6UXR4 307 aa17.27■□□□□ 0.35
CCDC28B-202ENST00000421922 IGDCC3Q8IVU1 814 aa17.27■□□□□ 0.35
CCDC28B-202ENST00000421922 NDUFAF2Q8N183 169 aa17.27■□□□□ 0.35
CCDC28B-202ENST00000421922 SLC44A3Q8N4M1 653 aa17.27■□□□□ 0.35
CCDC28B-202ENST00000421922 GSDMBQ8TAX9 411 aa17.27■□□□□ 0.35
CCDC28B-202ENST00000421922 EPB41L4BQ9H329 900 aa17.27■□□□□ 0.35
CCDC28B-202ENST00000421922 TRPV5Q9NQA5 729 aa17.27■□□□□ 0.35
CCDC28B-202ENST00000421922 RPS6KL1Q9Y6S9 549 aa17.27■□□□□ 0.35
CCDC28B-202ENST00000421922 EDDM13A0A1B0GTR0 161 aa17.26■□□□□ 0.35
CCDC28B-202ENST00000421922 FAM237BA0A1B0GVD1 139 aa17.26■□□□□ 0.35
CCDC28B-202ENST00000421922 TTC34A8MYJ7 566 aa17.26■□□□□ 0.35
CCDC28B-202ENST00000421922 SPECC1L-ADORA2AF8WAN1 911 aa17.26■□□□□ 0.35
CCDC28B-202ENST00000421922 PIGNO95427 931 aa17.26■□□□□ 0.35
CCDC28B-202ENST00000421922 PAMP19021 973 aa17.26■□□□□ 0.35
CCDC28B-202ENST00000421922 ADRA1DP25100 572 aa17.26■□□□□ 0.35
CCDC28B-202ENST00000421922 PTPRNQ16849 979 aa17.26■□□□□ 0.35
CCDC28B-202ENST00000421922 KRT71Q3SY84 523 aa17.26■□□□□ 0.35
CCDC28B-202ENST00000421922 NAIF1Q69YI7 327 aaPredicted RBP17.26■□□□□ 0.35
CCDC28B-202ENST00000421922 DENND5AQ6IQ26 1287 aa17.26■□□□□ 0.35
CCDC28B-202ENST00000421922 UNC5AQ6ZN44 842 aa17.26■□□□□ 0.35
CCDC28B-202ENST00000421922 DPY19L3Q6ZPD9 716 aa17.26■□□□□ 0.35
CCDC28B-202ENST00000421922 MTERF4Q7Z6M4 381 aaKnown RBP17.26■□□□□ 0.35
CCDC28B-202ENST00000421922 PLPP6Q8IY26 295 aa17.26■□□□□ 0.35
CCDC28B-202ENST00000421922 PHTF2Q8N3S3 785 aa17.26■□□□□ 0.35
CCDC28B-202ENST00000421922 OR2W6PQ8NHA6 318 aa17.26■□□□□ 0.35
CCDC28B-202ENST00000421922 BLOC1S5Q8TDH9 187 aa17.26■□□□□ 0.35
CCDC28B-202ENST00000421922 CHFRQ96EP1 664 aa17.26■□□□□ 0.35
CCDC28B-202ENST00000421922 HEPHQ9BQS7 1158 aa17.26■□□□□ 0.35
CCDC28B-202ENST00000421922 WDR83Q9BRX9 315 aaKnown RBP17.26■□□□□ 0.35
CCDC28B-202ENST00000421922 CENPHQ9H3R5 247 aa17.26■□□□□ 0.35
CCDC28B-202ENST00000421922 PPANQ9NQ55 473 aaKnown RBP17.26■□□□□ 0.35
CCDC28B-202ENST00000421922 SOX13Q9UN79 622 aa17.26■□□□□ 0.35
CCDC28B-202ENST00000421922 TCAF1Q9Y4C2 921 aa17.26■□□□□ 0.35
CCDC28B-202ENST00000421922 PCDHB9Q9Y5E1 797 aa17.26■□□□□ 0.35
CCDC28B-202ENST00000421922 PIAS3Q9Y6X2 628 aa17.26■□□□□ 0.35
CCDC28B-202ENST00000421922 A0A1W2PQ67 120 aa17.25■□□□□ 0.35
CCDC28B-202ENST00000421922 SMIM23A6NLE4 172 aa17.25■□□□□ 0.35
CCDC28B-202ENST00000421922 USP1O94782 785 aa17.25■□□□□ 0.35
CCDC28B-202ENST00000421922 ASGR2P07307 311 aa17.25■□□□□ 0.35
CCDC28B-202ENST00000421922 ATXN1LP0C7T5 689 aaKnown RBP17.25■□□□□ 0.35
CCDC28B-202ENST00000421922 MYZAPP0CAP1 466 aa17.25■□□□□ 0.35
CCDC28B-202ENST00000421922 NFKBIAP25963 317 aa17.25■□□□□ 0.35
CCDC28B-202ENST00000421922 CTHP32929 405 aa17.25■□□□□ 0.35
CCDC28B-202ENST00000421922 GRIA4P48058 902 aa17.25■□□□□ 0.35
CCDC28B-202ENST00000421922 GPX6P59796 221 aa17.25■□□□□ 0.35
CCDC28B-202ENST00000421922 RPL26P61254 145 aaKnown RBP17.25■□□□□ 0.35
CCDC28B-202ENST00000421922 ZNF234Q14588 700 aa17.25■□□□□ 0.35
CCDC28B-202ENST00000421922 CRYMQ14894 314 aa17.25■□□□□ 0.35
CCDC28B-202ENST00000421922 RALGPS2Q86X27 583 aaPredicted RBP17.25■□□□□ 0.35
CCDC28B-202ENST00000421922 CAMK1DQ8IU85 385 aa17.25■□□□□ 0.35
CCDC28B-202ENST00000421922 IQCKQ8N0W5 287 aa17.25■□□□□ 0.35
CCDC28B-202ENST00000421922 AGGF1Q8N302 714 aaeCLIP17.25■□□□□ 0.35
CCDC28B-202ENST00000421922 SERBP1Q8NC51 408 aaKnown RBP eCLIP17.25■□□□□ 0.35
CCDC28B-202ENST00000421922 GRIN3AQ8TCU5 1115 aa17.25■□□□□ 0.35
CCDC28B-202ENST00000421922 FBF1Q8TES7 1133 aa17.25■□□□□ 0.35
CCDC28B-202ENST00000421922 CDKL2Q92772 493 aa17.25■□□□□ 0.35
CCDC28B-202ENST00000421922 PKNOX2Q96KN3 472 aa17.25■□□□□ 0.35
CCDC28B-202ENST00000421922 CYTH2Q99418 400 aa17.25■□□□□ 0.35
CCDC28B-202ENST00000421922 CPEB1Q9BZB8 566 aaKnown RBP17.25■□□□□ 0.35
CCDC28B-202ENST00000421922 MRM3Q9HC36 420 aaKnown RBP17.25■□□□□ 0.35
CCDC28B-202ENST00000421922 RPL26L1Q9UNX3 145 aaKnown RBP17.25■□□□□ 0.35
CCDC28B-202ENST00000421922 IKBKGQ9Y6K9 419 aa17.25■□□□□ 0.35
CCDC28B-202ENST00000421922 TLDC2A0PJX2 215 aa17.24■□□□□ 0.35
CCDC28B-202ENST00000421922 ZNF821O75541 412 aaPredicted RBP17.24■□□□□ 0.35
CCDC28B-202ENST00000421922 PGLSO95336 258 aa17.24■□□□□ 0.35
CCDC28B-202ENST00000421922 CRTAMO95727 393 aa17.24■□□□□ 0.35
CCDC28B-202ENST00000421922 SHBGP04278 402 aa17.24■□□□□ 0.35
CCDC28B-202ENST00000421922 TNFRSF4P43489 277 aa17.24■□□□□ 0.35
CCDC28B-202ENST00000421922 GALK1P51570 392 aa17.24■□□□□ 0.35
CCDC28B-202ENST00000421922 MESP2Q0VG99 397 aa17.24■□□□□ 0.35
CCDC28B-202ENST00000421922 IHHQ14623 411 aa17.24■□□□□ 0.35
CCDC28B-202ENST00000421922 UBAP2Q5T6F2 1119 aaKnown RBP17.24■□□□□ 0.35
CCDC28B-202ENST00000421922 STEAP4Q687X5 459 aa17.24■□□□□ 0.35
CCDC28B-202ENST00000421922 PKN3Q6P5Z2 889 aa17.24■□□□□ 0.35
CCDC28B-202ENST00000421922 NLRP9Q7RTR0 991 aa17.24■□□□□ 0.35
CCDC28B-202ENST00000421922 OR2A12Q8NGT7 310 aa17.24■□□□□ 0.35
CCDC28B-202ENST00000421922 FRS2Q8WU20 508 aa17.24■□□□□ 0.35
CCDC28B-202ENST00000421922 OR8D1Q8WZ84 308 aa17.24■□□□□ 0.35
CCDC28B-202ENST00000421922 MSANTD3Q96H12 275 aa17.24■□□□□ 0.35
CCDC28B-202ENST00000421922 ZNF641Q96N77 438 aaPredicted RBP17.24■□□□□ 0.35
CCDC28B-202ENST00000421922 TRIB3Q96RU7 358 aa17.24■□□□□ 0.35
CCDC28B-202ENST00000421922 RANBP9Q96S59 729 aa17.24■□□□□ 0.35
CCDC28B-202ENST00000421922 OSBPL1AQ9BXW6 950 aa17.24■□□□□ 0.35
CCDC28B-202ENST00000421922 ROPN1BQ9BZX4 212 aaPredicted RBP17.24■□□□□ 0.35
CCDC28B-202ENST00000421922 SUV39H2Q9H5I1 410 aa17.24■□□□□ 0.35
CCDC28B-202ENST00000421922 PPCSQ9HAB8 311 aa17.24■□□□□ 0.35
CCDC28B-202ENST00000421922 ROPN1Q9HAT0 212 aaPredicted RBP17.24■□□□□ 0.35
CCDC28B-202ENST00000421922 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP17.24■□□□□ 0.35
CCDC28B-202ENST00000421922 HACD3Q9P035 362 aa17.24■□□□□ 0.35
CCDC28B-202ENST00000421922 SUN2Q9UH99 717 aa17.24■□□□□ 0.35
CCDC28B-202ENST00000421922 IL36AQ9UHA7 158 aa17.24■□□□□ 0.35
CCDC28B-202ENST00000421922 MUC22E2RYF6 1773 aaPredicted RBP17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms