RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 CYTH2Q99418 400 aa13.58□□□□□ -0.24
LIMS1-204ENST00000409441 WDR83Q9BRX9 315 aaKnown RBP13.58□□□□□ -0.24
LIMS1-204ENST00000409441 TRABDQ9H4I3 376 aa13.58□□□□□ -0.24
LIMS1-204ENST00000409441 ACTR5Q9H9F9 607 aaPredicted RBP13.58□□□□□ -0.24
LIMS1-204ENST00000409441 ZDHHC4Q9NPG8 344 aa13.58□□□□□ -0.24
LIMS1-204ENST00000409441 THAP10Q9P2Z0 257 aaPredicted RBP13.58□□□□□ -0.24
LIMS1-204ENST00000409441 UBA2Q9UBT2 640 aaPredicted RBP13.58□□□□□ -0.24
LIMS1-204ENST00000409441 HS3ST2Q9Y278 367 aa13.58□□□□□ -0.24
LIMS1-204ENST00000409441 BDP1A6H8Y1 2624 aa13.58□□□□□ -0.24
LIMS1-204ENST00000409441 SMAD6O43541 496 aaKnown RBP13.57□□□□□ -0.24
LIMS1-204ENST00000409441 BANF1O75531 89 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 PEX11BO96011 259 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 HNRNPLP14866 589 aaKnown RBP eCLIP13.57□□□□□ -0.24
LIMS1-204ENST00000409441 SSTR1P30872 391 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 ST8SIA6P61647 398 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 SLC10A7Q0GE19 358 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 MPP2Q14168 576 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 ZNF234Q14588 700 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 PRKD1Q15139 912 aaPredicted RBP13.57□□□□□ -0.24
LIMS1-204ENST00000409441 E2F5Q15329 346 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 ACCSLQ4AC99 568 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 INO80DQ53TQ3 878 aaPredicted RBP13.57□□□□□ -0.24
LIMS1-204ENST00000409441 C10orf67Q8IYJ2 551 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 ZNF513Q8N8E2 541 aaPredicted RBP13.57□□□□□ -0.24
LIMS1-204ENST00000409441 FBF1Q8TES7 1133 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 NSMCE1Q8WV22 266 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 ZNF599Q96NL3 588 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 ACOX2Q99424 681 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 RASSF4Q9H2L5 321 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 NCOR1O75376 2440 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 WASH3PC4AMC7 463 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 KCNK1O00180 336 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 NPC1O15118 1278 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 FSBPO95073 299 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 CPP00450 1065 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 SRCP12931 536 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 CCNB1P14635 433 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 ELK3P41970 407 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 MSH2P43246 934 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 SERPINH1P50454 418 aaKnown RBP13.57□□□□□ -0.24
LIMS1-204ENST00000409441 VASPP50552 380 aaPredicted RBP13.57□□□□□ -0.24
LIMS1-204ENST00000409441 RENBPP51606 427 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 MRPS21P82921 87 aaKnown RBP13.57□□□□□ -0.24
LIMS1-204ENST00000409441 HNRNPDQ14103 355 aaKnown RBP13.57□□□□□ -0.24
LIMS1-204ENST00000409441 LRRC32Q14392 662 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 RFTN1Q14699 578 aaPredicted RBP13.57□□□□□ -0.24
LIMS1-204ENST00000409441 LRRC14Q15048 493 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 CYTH1Q15438 398 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 DLG2Q15700 870 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 FNDC3BQ53EP0 1204 aaKnown RBP13.57□□□□□ -0.24
LIMS1-204ENST00000409441 MARC1Q5VT66 337 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 HEATR6Q6AI08 1181 aaKnown RBP13.57□□□□□ -0.24
LIMS1-204ENST00000409441 CAPN12Q6ZSI9 719 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 TAX1BP1Q86VP1 789 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 CHPFQ8IZ52 775 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 SYNPOQ8N3V7 929 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 KDM1BQ8NB78 822 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 FLCNQ8NFG4 579 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 USP33Q8TEY7 942 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 FATE1Q969F0 183 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 ALKBH8Q96BT7 664 aaKnown RBP13.57□□□□□ -0.24
LIMS1-204ENST00000409441 GRAMD1AQ96CP6 724 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 MYO19Q96H55 970 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 PAFAH2Q99487 392 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 FERMT1Q9BQL6 677 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 PLCD4Q9BRC7 762 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 KDM4CQ9H3R0 1056 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 MFSD1Q9H3U5 465 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 CHMP2BQ9UQN3 213 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 FCF1Q9Y324 198 aaKnown RBP13.57□□□□□ -0.24
LIMS1-204ENST00000409441 SIT1Q9Y3P8 196 aa13.57□□□□□ -0.24
LIMS1-204ENST00000409441 VCANP13611 3396 aa13.56□□□□□ -0.24
LIMS1-204ENST00000409441 A0A0C4DFX4 3053 aa13.56□□□□□ -0.24
LIMS1-204ENST00000409441 TRIOO75962 3097 aa13.56□□□□□ -0.24
LIMS1-204ENST00000409441 TTC34A8MYJ7 566 aa13.56□□□□□ -0.24
LIMS1-204ENST00000409441 TCP11X1B4DZS4 312 aa13.56□□□□□ -0.24
LIMS1-204ENST00000409441 ATP9BO43861 1147 aa13.56□□□□□ -0.24
LIMS1-204ENST00000409441 JCHAINP01591 159 aa13.56□□□□□ -0.24
LIMS1-204ENST00000409441 CHRM1P11229 460 aaPredicted RBP13.56□□□□□ -0.24
LIMS1-204ENST00000409441 VAV1P15498 845 aa13.56□□□□□ -0.24
LIMS1-204ENST00000409441 FDFT1P37268 417 aa13.56□□□□□ -0.24
LIMS1-204ENST00000409441 IL12RB1P42701 662 aa13.56□□□□□ -0.24
LIMS1-204ENST00000409441 WASP42768 502 aa13.56□□□□□ -0.24
LIMS1-204ENST00000409441 NRLP54845 237 aa13.56□□□□□ -0.24
LIMS1-204ENST00000409441 CDK16Q00536 496 aa13.56□□□□□ -0.24
LIMS1-204ENST00000409441 SPARCL1Q14515 664 aa13.56□□□□□ -0.24
LIMS1-204ENST00000409441 LBRQ14739 615 aaKnown RBP13.56□□□□□ -0.24
LIMS1-204ENST00000409441 LACTB2Q53H82 288 aaPredicted RBP13.56□□□□□ -0.24
LIMS1-204ENST00000409441 RNF187Q5TA31 235 aaPredicted RBP13.56□□□□□ -0.24
LIMS1-204ENST00000409441 TMCO4Q5TGY1 634 aa13.56□□□□□ -0.24
LIMS1-204ENST00000409441 SDE2Q6IQ49 451 aa13.56□□□□□ -0.24
LIMS1-204ENST00000409441 SERPINA13PQ6UXR4 307 aa13.56□□□□□ -0.24
LIMS1-204ENST00000409441 RGS9BPQ6ZS82 235 aa13.56□□□□□ -0.24
LIMS1-204ENST00000409441 METTL3Q86U44 580 aaKnown RBP13.56□□□□□ -0.24
LIMS1-204ENST00000409441 TAB3Q8N5C8 712 aaPredicted RBP13.56□□□□□ -0.24
LIMS1-204ENST00000409441 TEX26Q8N6G2 289 aa13.56□□□□□ -0.24
LIMS1-204ENST00000409441 IL17RCQ8NAC3 791 aa13.56□□□□□ -0.24
LIMS1-204ENST00000409441 DENND1AQ8TEH3 1009 aa13.56□□□□□ -0.24
LIMS1-204ENST00000409441 HTR3CQ8WXA8 447 aa13.56□□□□□ -0.24
LIMS1-204ENST00000409441 OSBPL6Q9BZF3 934 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms