RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 RNF169Q8NCN4 708 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 FAM46DQ8NEK8 389 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 FAM216AQ8WUB2 273 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 SCAMP4Q969E2 229 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 FAM149B1Q96BN6 582 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 RNFT2Q96EX2 444 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 PHACTR3Q96KR7 559 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 KLHL15Q96M94 604 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 C5orf34Q96MH7 638 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 BBC3Q96PG8 261 aaPredicted RBP4.24□□□□□ -1.73
HMGB1-204ENST00000399489 FAM111AQ96PZ2 611 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 FAM118BQ9BPY3 351 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 PAAF1Q9BRP4 392 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 TCHPQ9BT92 498 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 CACNG6Q9BXT2 260 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 SLC5A7Q9GZV3 580 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 NCOR1P1Q9H4R4 102 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 MRPS18AQ9NVS2 196 aaKnown RBP4.24□□□□□ -1.73
HMGB1-204ENST00000399489 CYP39A1Q9NYL5 469 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 CNIH4Q9P003 139 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 LRIT1Q9P2V4 623 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 HESX1Q9UBX0 185 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 FBXL17Q9UF56 701 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 MKLN1Q9UL63 735 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 NFS1Q9Y697 457 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 COX11Q9Y6N1 276 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 ATP8B3O60423 1300 aa4.23□□□□□ -1.73
HMGB1-204ENST00000399489 TEX13CA0A0J9YWL9 993 aa4.23□□□□□ -1.73
HMGB1-204ENST00000399489 TCRBV7S2A1N4TA0A589 114 aa4.23□□□□□ -1.73
HMGB1-204ENST00000399489 MBD3L5A6NJ08 208 aaPredicted RBP4.23□□□□□ -1.73
HMGB1-204ENST00000399489 CCDC169A6NNP5 214 aa4.23□□□□□ -1.73
HMGB1-204ENST00000399489 KIAA0391O15091 583 aaKnown RBP4.23□□□□□ -1.73
HMGB1-204ENST00000399489 TADA2AO75478 443 aa4.23□□□□□ -1.73
HMGB1-204ENST00000399489 CDKL5O76039 1030 aa4.23□□□□□ -1.73
HMGB1-204ENST00000399489 PRR35P0CG20 571 aa4.23□□□□□ -1.73
HMGB1-204ENST00000399489 ERCC2P18074 760 aa4.23□□□□□ -1.73
HMGB1-204ENST00000399489 FDXRP22570 491 aa4.23□□□□□ -1.73
HMGB1-204ENST00000399489 MXI1P50539 228 aa4.23□□□□□ -1.73
HMGB1-204ENST00000399489 BMXP51813 675 aa4.23□□□□□ -1.73
HMGB1-204ENST00000399489 PTTG1IPP53801 180 aa4.23□□□□□ -1.73
HMGB1-204ENST00000399489 CCNA1P78396 465 aa4.23□□□□□ -1.73
HMGB1-204ENST00000399489 GBE1Q04446 702 aa4.23□□□□□ -1.73
HMGB1-204ENST00000399489 RNASELQ05823 741 aaKnown RBP4.23□□□□□ -1.73
HMGB1-204ENST00000399489 FHL3Q13643 280 aa4.23□□□□□ -1.73
HMGB1-204ENST00000399489 PDK1Q15118 436 aa4.23□□□□□ -1.73
HMGB1-204ENST00000399489 CSRP2Q16527 193 aa4.23□□□□□ -1.73
HMGB1-204ENST00000399489 ZIK1Q3SY52 487 aaPredicted RBP4.23□□□□□ -1.73
HMGB1-204ENST00000399489 FAM47AQ5JRC9 791 aa4.23□□□□□ -1.73
HMGB1-204ENST00000399489 LCE1EQ5T753 118 aa4.23□□□□□ -1.73
HMGB1-204ENST00000399489 ANKS6Q68DC2 871 aa4.23□□□□□ -1.73
HMGB1-204ENST00000399489 MTHFD1LQ6UB35 978 aa4.23□□□□□ -1.73
HMGB1-204ENST00000399489 PIK3AP1Q6ZUJ8 805 aa4.23□□□□□ -1.73
HMGB1-204ENST00000399489 MARK2Q7KZI7 788 aaKnown RBP4.23□□□□□ -1.73
HMGB1-204ENST00000399489 HOOK3Q86VS8 718 aa4.23□□□□□ -1.73
HMGB1-204ENST00000399489 ZNF280BQ86YH2 543 aa4.23□□□□□ -1.73
HMGB1-204ENST00000399489 TICAM1Q8IUC6 712 aa4.23□□□□□ -1.73
HMGB1-204ENST00000399489 PI4KAP1Q8N8J0 262 aa4.23□□□□□ -1.73
HMGB1-204ENST00000399489 SLC13A3Q8WWT9 602 aa4.23□□□□□ -1.73
HMGB1-204ENST00000399489 SLC5A11Q8WWX8 675 aa4.23□□□□□ -1.73
HMGB1-204ENST00000399489 INTS14Q96SY0 518 aa4.23□□□□□ -1.73
HMGB1-204ENST00000399489 MAP7D2Q96T17 732 aa4.23□□□□□ -1.73
HMGB1-204ENST00000399489 SH3GL2Q99962 352 aa4.23□□□□□ -1.73
HMGB1-204ENST00000399489 MGME1Q9BQP7 344 aa4.23□□□□□ -1.73
HMGB1-204ENST00000399489 CCDC106Q9BWC9 280 aa4.23□□□□□ -1.73
HMGB1-204ENST00000399489 ACPTQ9BZG2 426 aa4.23□□□□□ -1.73
HMGB1-204ENST00000399489 MAGEE1Q9HCI5 957 aa4.23□□□□□ -1.73
HMGB1-204ENST00000399489 PDE11AQ9HCR9 933 aa4.23□□□□□ -1.73
HMGB1-204ENST00000399489 CD93Q9NPY3 652 aa4.23□□□□□ -1.73
HMGB1-204ENST00000399489 SERINC1Q9NRX5 453 aa4.23□□□□□ -1.73
HMGB1-204ENST00000399489 SYBUQ9NX95 663 aa4.23□□□□□ -1.73
HMGB1-204ENST00000399489 UTP6Q9NYH9 597 aaKnown RBP4.23□□□□□ -1.73
HMGB1-204ENST00000399489 NENFQ9UMX5 172 aa4.23□□□□□ -1.73
HMGB1-204ENST00000399489 RPH3AQ9Y2J0 694 aaPredicted RBP4.23□□□□□ -1.73
HMGB1-204ENST00000399489 KCNK7Q9Y2U2 307 aa4.23□□□□□ -1.73
HMGB1-204ENST00000399489 CAPN7Q9Y6W3 813 aa4.23□□□□□ -1.73
HMGB1-204ENST00000399489 AOX1Q06278 1338 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 TCRBV21S2A2A0A5A6 115 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 ZSCAN5CA6NGD5 496 aaPredicted RBP4.22□□□□□ -1.73
HMGB1-204ENST00000399489 AGAP5A6NIR3 686 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 M0QYT0 321 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 DCLK1O15075 740 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 ADAMDEC1O15204 470 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 ZNF185O15231 689 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 PAPSS1O43252 624 aaPredicted RBP4.22□□□□□ -1.73
HMGB1-204ENST00000399489 CA12O43570 354 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 HAUS5O94927 633 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 SLCO2B1O94956 709 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 ESRRBO95718 433 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 CHEK2O96017 543 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 C1RP00736 705 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 PENKP01210 267 aaPredicted RBP4.22□□□□□ -1.73
HMGB1-204ENST00000399489 RAP2AP10114 183 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 PDHBP11177 359 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 ITGAMP11215 1152 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 TMEM11P17152 192 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 TMOD1P28289 359 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 NTSR1P30989 418 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 CPOXP36551 454 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 EFNB1P98172 346 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 RALGDSQ12967 914 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms