RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 CLEC6AQ6EIG7 209 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 TUBA3EQ6PEY2 450 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 SCIMPQ6UWF3 145 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 RALGPS2Q86X27 583 aaPredicted RBP9.37□□□□□ -0.91
COL28A1-201ENST00000399429 SETD9Q8NE22 299 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 LRRC20Q8TCA0 184 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 DDX1Q92499 740 aaKnown RBP9.37□□□□□ -0.91
COL28A1-201ENST00000399429 EFHD2Q96C19 240 aaPredicted RBP9.37□□□□□ -0.91
COL28A1-201ENST00000399429 SPATA13Q96N96 652 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 MUS81Q96NY9 551 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 YME1L1Q96TA2 773 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 AGAP2Q99490 1192 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 ZDHHC2Q9UIJ5 367 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 RIMS3Q9UJD0 308 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 CSADQ9Y600 493 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 FAM95CA0A1B0GW59 222 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 GUCY1B2O75343 617 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 CCNE2O96020 404 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 PRLP01236 227 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 HGFP14210 728 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 CDK18Q07002 472 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 TOP3AQ13472 1001 aaPredicted RBP9.37□□□□□ -0.91
COL28A1-201ENST00000399429 TCEAL1Q15170 157 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 CCSAPQ6IQ19 270 aaPredicted RBP9.37□□□□□ -0.91
COL28A1-201ENST00000399429 ANKRD26P1Q6NSI1 321 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 PGM2L1Q6PCE3 622 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 KIAA0408Q6ZU52 694 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 CATSPER4Q7RTX7 472 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 RAB43Q86YS6 212 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 CCDC28AQ8IWP9 274 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 IQCF2Q8IXL9 164 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 DEPDC4Q8N2C3 294 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 MCOLN3Q8TDD5 553 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 ACER1Q8TDN7 264 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.37□□□□□ -0.91
COL28A1-201ENST00000399429 TAAR1Q96RJ0 339 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 COA1Q9GZY4 146 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 SP140LQ9H930 580 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 CDHR5Q9HBB8 845 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 BTRCQ9Y297 605 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 SPEF2Q9C093 1822 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 SAGE2PA6NJ88 616 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 B4GAT1O43505 415 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 AP1G1O43747 822 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 SNNO75324 88 aaPredicted RBP9.37□□□□□ -0.91
COL28A1-201ENST00000399429 MICAL2O94851 1124 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 CRYZL1O95825 349 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 ANGPTL1O95841 491 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 EPHX2P34913 555 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 SLC26A3P40879 764 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 TMBIM6P55061 237 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 CD300CQ08708 224 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 DDR2Q16832 855 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 PIGGQ5H8A4 983 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 DDX59Q5T1V6 619 aaKnown RBP eCLIP9.37□□□□□ -0.91
COL28A1-201ENST00000399429 ERMP1Q7Z2K6 904 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 R3HCC1LQ7Z5L2 792 aaKnown RBP9.37□□□□□ -0.91
COL28A1-201ENST00000399429 ACOT1Q86TX2 421 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 C4orf19Q8IY42 314 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 DAW1Q8N136 415 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 C19orf18Q8NEA5 215 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 ZNF486Q96H40 463 aaPredicted RBP9.37□□□□□ -0.91
COL28A1-201ENST00000399429 CPXM1Q96SM3 734 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 GBA3Q9H227 469 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 ADPRHL2Q9NX46 363 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 WRAP73Q9P2S5 460 aaPredicted RBP9.37□□□□□ -0.91
COL28A1-201ENST00000399429 PSAT1Q9Y617 370 aa9.37□□□□□ -0.91
COL28A1-201ENST00000399429 E5RI56 91 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 TMX2-CTNND1H3BSU7 103 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 EPN2O95208 641 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 RBP1P09455 135 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 EMP3P54852 163 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 MPP1Q00013 466 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 NAB1Q13506 487 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 ITPK1Q13572 414 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 SYT16Q17RD7 645 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 INTS5Q6P9B9 1019 aaKnown RBP9.36□□□□□ -0.91
COL28A1-201ENST00000399429 HIPK1Q86Z02 1210 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 SMG8Q8ND04 991 aaKnown RBP9.36□□□□□ -0.91
COL28A1-201ENST00000399429 MAPK15Q8TD08 544 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 UTP15Q8TED0 518 aaKnown RBP9.36□□□□□ -0.91
COL28A1-201ENST00000399429 ULK4Q96C45 1275 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 MFSD3Q96ES6 412 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 TBATAQ96M53 351 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 MFSD14AQ96MC6 490 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 GAD1Q99259 594 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 RBBP8Q99708 897 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 NPLQ9BXD5 320 aaPredicted RBP9.36□□□□□ -0.91
COL28A1-201ENST00000399429 UGT2B28Q9BY64 529 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 SDCBP2Q9H190 292 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 ZBTB26Q9HCK0 441 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 SUCOQ9UBS9 1254 aaKnown RBP9.36□□□□□ -0.91
COL28A1-201ENST00000399429 GMPPBQ9Y5P6 360 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 NRP1O14786 923 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 SOAT2O75908 522 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 ATP5F1P24539 256 aaPredicted RBP9.36□□□□□ -0.91
COL28A1-201ENST00000399429 MTHFRP42898 656 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 BCAT1P54687 386 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 AMHR2Q16671 573 aa9.36□□□□□ -0.91
COL28A1-201ENST00000399429 TEX44Q53QW1 395 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms