RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 CDYL2Q8N8U2 506 aa11.42□□□□□ -0.58
TTC28-201ENST00000397906 ETNPPLQ8TBG4 499 aa11.42□□□□□ -0.58
TTC28-201ENST00000397906 ITPKBP27987 946 aa11.42□□□□□ -0.58
TTC28-201ENST00000397906 GCNT7Q6ZNI0 430 aa11.42□□□□□ -0.58
TTC28-201ENST00000397906 DENND6AQ8IWF6 608 aa11.42□□□□□ -0.58
TTC28-201ENST00000397906 IZUMO1Q8IYV9 350 aa11.42□□□□□ -0.58
TTC28-201ENST00000397906 TOP6BLQ8N6T0 577 aa11.42□□□□□ -0.58
TTC28-201ENST00000397906 OR4L1Q8NH43 312 aa11.42□□□□□ -0.58
TTC28-201ENST00000397906 ATL1Q8WXF7 558 aa11.42□□□□□ -0.58
TTC28-201ENST00000397906 THAP1Q9NVV9 213 aa11.42□□□□□ -0.58
TTC28-201ENST00000397906 SULT2A1Q06520 285 aa11.42□□□□□ -0.58
TTC28-201ENST00000397906 RNF157Q96PX1 679 aa11.42□□□□□ -0.58
TTC28-201ENST00000397906 MYL12AP19105 171 aa11.42□□□□□ -0.58
TTC28-201ENST00000397906 ABHD15Q6UXT9 468 aa11.42□□□□□ -0.58
TTC28-201ENST00000397906 STK32CQ86UX6 486 aa11.42□□□□□ -0.58
TTC28-201ENST00000397906 TNS4Q8IZW8 715 aa11.42□□□□□ -0.58
TTC28-201ENST00000397906 NKAPQ8N5F7 415 aaKnown RBP11.42□□□□□ -0.58
TTC28-201ENST00000397906 ELL3Q9HB65 397 aaPredicted RBP11.42□□□□□ -0.58
TTC28-201ENST00000397906 SERPINB1P30740 379 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 GRSF1Q12849 480 aaKnown RBP eCLIP11.41□□□□□ -0.58
TTC28-201ENST00000397906 TRIM25Q14258 630 aaKnown RBP11.41□□□□□ -0.58
TTC28-201ENST00000397906 MPPE1Q53F39 396 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 ZNF563Q8TA94 476 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 ATAD3AQ9NVI7 634 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 RAD23AP54725 363 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 IFI35P80217 286 aaPredicted RBP11.41□□□□□ -0.58
TTC28-201ENST00000397906 KLHL35Q6PF15 583 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 C15orf52Q6ZUT6 534 aaKnown RBP11.41□□□□□ -0.58
TTC28-201ENST00000397906 PAGE2Q7Z2X7 111 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 CACTIN-AS1Q8N1I8 211 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 NPEPPSL1A6NEC2 478 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 MYL12BO14950 172 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 CHADO15335 359 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 NQO1P15559 274 aaKnown RBP11.41□□□□□ -0.58
TTC28-201ENST00000397906 NUP62P37198 522 aaPredicted RBP11.41□□□□□ -0.58
TTC28-201ENST00000397906 HDAC7Q8WUI4 952 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 AARSD1Q9BTE6 412 aaKnown RBP11.41□□□□□ -0.58
TTC28-201ENST00000397906 PRDM12Q9H4Q4 367 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 CD3EAPO15446 510 aaKnown RBP11.41□□□□□ -0.58
TTC28-201ENST00000397906 VPS4BO75351 444 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 PRLRP16471 622 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 ERCC2P18074 760 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 IFNGR2P38484 337 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 TMC5Q6UXY8 1006 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 TMC3Q7Z5M5 1100 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 ATP6V1C2Q8NEY4 427 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 BDH2Q9BUT1 245 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 PTCH2Q9Y6C5 1203 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 PKNOX1P55347 436 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 CDK18Q07002 472 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 BTN2A3PQ96KV6 586 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 DPEP3Q9H4B8 488 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 C11orf49Q9H6J7 331 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 LRPAP1P30533 357 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 NEK3P51956 506 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 RAPSNQ13702 412 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 LYPLAL1Q5VWZ2 237 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 METTL3Q86U44 580 aaKnown RBP11.41□□□□□ -0.58
TTC28-201ENST00000397906 HMGB4Q8WW32 186 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 TBC1D14Q9P2M4 693 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 ANAPC2Q9UJX6 822 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 BUD31P41223 144 aaPredicted RBP11.41□□□□□ -0.58
TTC28-201ENST00000397906 SEMA5AQ13591 1074 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 OR52L1Q8NGH7 329 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 RPL10LQ96L21 214 aaKnown RBP11.41□□□□□ -0.58
TTC28-201ENST00000397906 AGO3Q9H9G7 860 aaKnown RBP11.41□□□□□ -0.58
TTC28-201ENST00000397906 SPATA31C1P0DKV0 1188 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 ITIH4Q14624 930 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 RHBDF2Q6PJF5 856 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 MYCBPAPQ8TBZ2 947 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 HERVK_113Q902F9 699 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 PTGES3LE9PB15 166 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 AKT2P31751 481 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 MAGEA10P43363 369 aaPredicted RBP11.41□□□□□ -0.58
TTC28-201ENST00000397906 PRMT9Q6P2P2 845 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 FAM171BQ6P995 826 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 ACTRT2Q8TDY3 377 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 SLC31A1O15431 190 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 TSPAN1O60635 241 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 ADRA1DP25100 572 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 IRGCQ6NXR0 463 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 TSHZ1Q6ZSZ6 1077 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 TMPRSS11BQ86T26 416 aa11.41□□□□□ -0.58
TTC28-201ENST00000397906 SUCOQ9UBS9 1254 aaKnown RBP11.41□□□□□ -0.58
TTC28-201ENST00000397906 QSOX1O00391 747 aa11.4□□□□□ -0.58
TTC28-201ENST00000397906 FCGR1AP12314 374 aa11.4□□□□□ -0.58
TTC28-201ENST00000397906 PEX6Q13608 980 aa11.4□□□□□ -0.58
TTC28-201ENST00000397906 APTXQ7Z2E3 356 aaKnown RBP11.4□□□□□ -0.58
TTC28-201ENST00000397906 OR4A15Q8NGL6 344 aa11.4□□□□□ -0.58
TTC28-201ENST00000397906 SPPL2BQ8TCT7 592 aa11.4□□□□□ -0.58
TTC28-201ENST00000397906 CAMTA1Q9Y6Y1 1673 aa11.4□□□□□ -0.58
TTC28-201ENST00000397906 MATN4O95460 622 aa11.4□□□□□ -0.58
TTC28-201ENST00000397906 RANBP1P43487 201 aa11.4□□□□□ -0.58
TTC28-201ENST00000397906 TSNQ15631 228 aaKnown RBP11.4□□□□□ -0.58
TTC28-201ENST00000397906 PCDH20Q8N6Y1 951 aaKnown RBP11.4□□□□□ -0.58
TTC28-201ENST00000397906 C19orf18Q8NEA5 215 aa11.4□□□□□ -0.58
TTC28-201ENST00000397906 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.4□□□□□ -0.58
TTC28-201ENST00000397906 ZMPSTE24O75844 475 aa11.4□□□□□ -0.58
TTC28-201ENST00000397906 LPIN1Q14693 890 aa11.4□□□□□ -0.58
TTC28-201ENST00000397906 TATDN1Q6P1N9 297 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms