RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 ZDHHC5Q9C0B5 715 aa21.92■■□□□ 1.1
CLN3-207ENST00000395653 NOD2Q9HC29 1040 aa21.92■■□□□ 1.1
CLN3-207ENST00000395653 ZFR2Q9UPR6 939 aaKnown RBP21.92■■□□□ 1.1
CLN3-207ENST00000395653 PI4KAP42356 2102 aa21.92■■□□□ 1.1
CLN3-207ENST00000395653 DMXL1Q9Y485 3027 aa21.92■■□□□ 1.1
CLN3-207ENST00000395653 CEP250Q9BV73 2442 aa21.92■■□□□ 1.1
CLN3-207ENST00000395653 PLXNA2O75051 1894 aa21.92■■□□□ 1.1
CLN3-207ENST00000395653 CACNA1EQ15878 2313 aa21.91■■□□□ 1.1
CLN3-207ENST00000395653 TTC24A2A3L6 582 aaPredicted RBP21.91■■□□□ 1.1
CLN3-207ENST00000395653 UPK3BL1B0FP48 263 aa21.91■■□□□ 1.1
CLN3-207ENST00000395653 UPK3BL2E5RIL1 263 aa21.91■■□□□ 1.1
CLN3-207ENST00000395653 NEMP1O14524 444 aa21.91■■□□□ 1.1
CLN3-207ENST00000395653 NEBLO76041 1014 aa21.91■■□□□ 1.1
CLN3-207ENST00000395653 PECAM1P16284 738 aaPredicted RBP21.91■■□□□ 1.1
CLN3-207ENST00000395653 XPAP23025 273 aaPredicted RBP21.91■■□□□ 1.1
CLN3-207ENST00000395653 CES1P23141 567 aa21.91■■□□□ 1.1
CLN3-207ENST00000395653 AP1B1Q10567 949 aa21.91■■□□□ 1.1
CLN3-207ENST00000395653 ZNF284Q2VY69 593 aa21.91■■□□□ 1.1
CLN3-207ENST00000395653 SEL1L3Q68CR1 1132 aa21.91■■□□□ 1.1
CLN3-207ENST00000395653 ZSWIM9Q86XI8 627 aa21.91■■□□□ 1.1
CLN3-207ENST00000395653 P3H4Q92791 437 aa21.91■■□□□ 1.1
CLN3-207ENST00000395653 HES6Q96HZ4 224 aa21.91■■□□□ 1.1
CLN3-207ENST00000395653 SERAC1Q96JX3 654 aa21.91■■□□□ 1.1
CLN3-207ENST00000395653 PDLIM2Q96JY6 352 aa21.91■■□□□ 1.1
CLN3-207ENST00000395653 IL12RB2Q99665 862 aa21.91■■□□□ 1.1
CLN3-207ENST00000395653 OSBPL8Q9BZF1 889 aa21.91■■□□□ 1.1
CLN3-207ENST00000395653 TMEM9BQ9NQ34 198 aa21.91■■□□□ 1.1
CLN3-207ENST00000395653 SAE1Q9UBE0 346 aaPredicted RBP21.91■■□□□ 1.1
CLN3-207ENST00000395653 PACSIN2Q9UNF0 486 aaPredicted RBP21.91■■□□□ 1.1
CLN3-207ENST00000395653 ITM2BQ9Y287 266 aa21.91■■□□□ 1.1
CLN3-207ENST00000395653 A0A1W2PQ67 120 aa21.9■■□□□ 1.1
CLN3-207ENST00000395653 APOC4-APOC2K7ER74 178 aa21.9■■□□□ 1.1
CLN3-207ENST00000395653 KCNK1O00180 336 aa21.9■■□□□ 1.1
CLN3-207ENST00000395653 HTRA2O43464 458 aaPredicted RBP21.9■■□□□ 1.1
CLN3-207ENST00000395653 APOC2P02655 101 aa21.9■■□□□ 1.1
CLN3-207ENST00000395653 PYGMP11217 842 aa21.9■■□□□ 1.1
CLN3-207ENST00000395653 POLR2LP62875 67 aaKnown RBP21.9■■□□□ 1.1
CLN3-207ENST00000395653 ITKQ08881 620 aa21.9■■□□□ 1.1
CLN3-207ENST00000395653 ELP6Q0PNE2 266 aa21.9■■□□□ 1.1
CLN3-207ENST00000395653 GRIK2Q13002 908 aa21.9■■□□□ 1.1
CLN3-207ENST00000395653 LRRC73Q5JTD7 316 aa21.9■■□□□ 1.1
CLN3-207ENST00000395653 SEMA3CQ99985 751 aa21.9■■□□□ 1.1
CLN3-207ENST00000395653 HEMGNQ9BXL5 484 aa21.9■■□□□ 1.1
CLN3-207ENST00000395653 LZTFL1Q9NQ48 299 aa21.9■■□□□ 1.1
CLN3-207ENST00000395653 FSCN3Q9NQT6 498 aa21.9■■□□□ 1.1
CLN3-207ENST00000395653 GGT7Q9UJ14 662 aa21.9■■□□□ 1.1
CLN3-207ENST00000395653 PPP2R2CQ9Y2T4 447 aa21.9■■□□□ 1.1
CLN3-207ENST00000395653 PRAMEF26H0Y7S4 382 aa21.89■■□□□ 1.1
CLN3-207ENST00000395653 CDX4O14627 284 aaPredicted RBP21.89■■□□□ 1.1
CLN3-207ENST00000395653 DDX3YO15523 660 aaKnown RBP21.89■■□□□ 1.1
CLN3-207ENST00000395653 HLA-DQB2P05538 268 aa21.89■■□□□ 1.1
CLN3-207ENST00000395653 CD38P28907 300 aa21.89■■□□□ 1.1
CLN3-207ENST00000395653 CSNK1EP49674 416 aaKnown RBP21.89■■□□□ 1.1
CLN3-207ENST00000395653 ATXN3P54252 364 aaPredicted RBP21.89■■□□□ 1.1
CLN3-207ENST00000395653 PRKD1Q15139 912 aaPredicted RBP21.89■■□□□ 1.1
CLN3-207ENST00000395653 STPG1Q5TH74 334 aa21.89■■□□□ 1.1
CLN3-207ENST00000395653 ERAP2Q6P179 960 aa21.89■■□□□ 1.1
CLN3-207ENST00000395653 TFB1MQ8WVM0 346 aaKnown RBP21.89■■□□□ 1.1
CLN3-207ENST00000395653 SLC17A9Q9BYT1 436 aa21.89■■□□□ 1.1
CLN3-207ENST00000395653 AASDHPPTQ9NRN7 309 aa21.89■■□□□ 1.1
CLN3-207ENST00000395653 CDV3Q9UKY7 258 aaKnown RBP21.89■■□□□ 1.1
CLN3-207ENST00000395653 ATP8A1Q9Y2Q0 1164 aa21.89■■□□□ 1.1
CLN3-207ENST00000395653 PCDHGC4Q9Y5F7 938 aa21.89■■□□□ 1.1
CLN3-207ENST00000395653 ANKRD36A6QL64 1941 aa21.89■■□□□ 1.09
CLN3-207ENST00000395653 A0A1B0GVT2 93 aa21.89■■□□□ 1.09
CLN3-207ENST00000395653 RIOK3O14730 519 aaKnown RBP21.89■■□□□ 1.09
CLN3-207ENST00000395653 VILLO15195 856 aa21.89■■□□□ 1.09
CLN3-207ENST00000395653 JCHAINP01591 159 aa21.89■■□□□ 1.09
CLN3-207ENST00000395653 TRAF2Q12933 501 aa21.89■■□□□ 1.09
CLN3-207ENST00000395653 ZBTB17Q13105 803 aa21.89■■□□□ 1.09
CLN3-207ENST00000395653 RSPO4Q2I0M5 234 aaPredicted RBP21.89■■□□□ 1.09
CLN3-207ENST00000395653 TMEM52BQ4KMG9 183 aa21.89■■□□□ 1.09
CLN3-207ENST00000395653 SLC45A4Q5BKX6 768 aa21.89■■□□□ 1.09
CLN3-207ENST00000395653 IL27RAQ6UWB1 636 aa21.89■■□□□ 1.09
CLN3-207ENST00000395653 ADAT2Q7Z6V5 191 aaKnown RBP21.89■■□□□ 1.09
CLN3-207ENST00000395653 PAF1Q8N7H5 531 aa21.89■■□□□ 1.09
CLN3-207ENST00000395653 TMEM145Q8NBT3 493 aa21.89■■□□□ 1.09
CLN3-207ENST00000395653 ARRDC2Q8TBH0 407 aa21.89■■□□□ 1.09
CLN3-207ENST00000395653 ASB12Q8WXK4 309 aa21.89■■□□□ 1.09
CLN3-207ENST00000395653 SKA1Q96BD8 255 aa21.89■■□□□ 1.09
CLN3-207ENST00000395653 ALS2CR12Q96Q35 445 aa21.89■■□□□ 1.09
CLN3-207ENST00000395653 HERPUD2Q9BSE4 406 aa21.89■■□□□ 1.09
CLN3-207ENST00000395653 GTPBP2Q9BX10 602 aaKnown RBP21.89■■□□□ 1.09
CLN3-207ENST00000395653 C1QTNF2Q9BXJ5 285 aa21.89■■□□□ 1.09
CLN3-207ENST00000395653 PCDH12Q9NPG4 1184 aa21.89■■□□□ 1.09
CLN3-207ENST00000395653 TTLL3Q9Y4R7 772 aa21.89■■□□□ 1.09
CLN3-207ENST00000395653 A0A1W2PR77 199 aa21.88■■□□□ 1.09
CLN3-207ENST00000395653 SLC30A4O14863 429 aa21.88■■□□□ 1.09
CLN3-207ENST00000395653 WNT9AO14904 365 aa21.88■■□□□ 1.09
CLN3-207ENST00000395653 SLC31A1O15431 190 aa21.88■■□□□ 1.09
CLN3-207ENST00000395653 PRLRP16471 622 aa21.88■■□□□ 1.09
CLN3-207ENST00000395653 ITIH2P19823 946 aa21.88■■□□□ 1.09
CLN3-207ENST00000395653 HNRNPA2B1P22626 353 aaKnown RBP21.88■■□□□ 1.09
CLN3-207ENST00000395653 AKT2P31751 481 aa21.88■■□□□ 1.09
CLN3-207ENST00000395653 BNC1Q01954 994 aa21.88■■□□□ 1.09
CLN3-207ENST00000395653 GSE1Q14687 1217 aa21.88■■□□□ 1.09
CLN3-207ENST00000395653 IQCHQ86VS3 1027 aa21.88■■□□□ 1.09
CLN3-207ENST00000395653 CNTD1Q8N815 330 aa21.88■■□□□ 1.09
CLN3-207ENST00000395653 CXorf40AQ8TE69 158 aa21.88■■□□□ 1.09
CLN3-207ENST00000395653 KLK6Q92876 244 aa21.88■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms