RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 ENC1O14682 589 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 SCAMP3O14828 347 aaKnown RBP7.07□□□□□ -1.28
LIMA1-202ENST00000394943 IGHV4-34P06331 123 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 CA4P22748 312 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 RPL22P35268 128 aaKnown RBP7.07□□□□□ -1.28
LIMA1-202ENST00000394943 NEK3P51956 506 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 ADPRHP54922 357 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 CCDC15Q0P6D6 951 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 LONRF2Q1L5Z9 754 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 ZNF284Q2VY69 593 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 ZNF658BQ4V348 819 aaPredicted RBP7.07□□□□□ -1.28
LIMA1-202ENST00000394943 ZDHHC20Q5W0Z9 365 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 HEATR6Q6AI08 1181 aaKnown RBP7.07□□□□□ -1.28
LIMA1-202ENST00000394943 Q6ZVU0 165 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 SUMF1Q8NBK3 374 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 OR2T34Q8NGX1 318 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 PIP4K2CQ8TBX8 421 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 MCMBPQ9BTE3 642 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 LRRC40Q9H9A6 602 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 RAD18Q9NS91 495 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 RBM22Q9NW64 420 aaKnown RBP eCLIP7.07□□□□□ -1.28
LIMA1-202ENST00000394943 WHRNQ9P202 907 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 FAM153AQ9UHL3 310 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 A0A1W2PR77 199 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 ZNF185O15231 689 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 LEFTY1O75610 366 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 NDST3O95803 873 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 FGF1P05230 155 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 ADRB3P13945 408 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 TSHRP16473 764 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 TPMTP51580 245 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 STC1P52823 247 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 QPCTQ16769 361 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 STEAP4Q687X5 459 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 LRRC8BQ6P9F7 803 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 DBX2Q6ZNG2 339 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 TP53I13Q8NBR0 393 aaPredicted RBP7.07□□□□□ -1.28
LIMA1-202ENST00000394943 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP7.07□□□□□ -1.282e-6■■■■■ 29
LIMA1-202ENST00000394943 CENPTQ96BT3 561 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 MS4A14Q96JA4 679 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 VPS35Q96QK1 796 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 ZFR2Q9UPR6 939 aaKnown RBP7.07□□□□□ -1.28
LIMA1-202ENST00000394943 UNC80Q8N2C7 3258 aa7.07□□□□□ -1.28
LIMA1-202ENST00000394943 C16orf96A6NNT2 1141 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 EIF3HO15372 352 aaKnown RBP eCLIP7.06□□□□□ -1.28
LIMA1-202ENST00000394943 METTL18O95568 372 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 SERPINA4P29622 427 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 CD6P30203 668 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 VIPR1P32241 457 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 TRIM23P36406 574 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 ABL2P42684 1182 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 RHOAP61586 193 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 ELP6Q0PNE2 266 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 ILF2Q12905 390 aaKnown RBP7.06□□□□□ -1.28
LIMA1-202ENST00000394943 STARD3Q14849 445 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 UBXN2BQ14CS0 331 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 ANGPT1Q15389 498 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 SERPINA13PQ6UXR4 307 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 SYT10Q6XYQ8 523 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 ABI3BPQ7Z7G0 1075 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 PCGF5Q86SE9 256 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 TTC8Q8TAM2 541 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 COX14Q96I36 57 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 KLF6Q99612 283 aaPredicted RBP7.06□□□□□ -1.28
LIMA1-202ENST00000394943 ERVMER34-1Q9H9K5 563 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 HACD3Q9P035 362 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 SAE1Q9UBE0 346 aaPredicted RBP7.06□□□□□ -1.28
LIMA1-202ENST00000394943 TCRBV21S2A2A0A5A6 115 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 METTL12A8MUP2 240 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 GAPDHSO14556 408 aaPredicted RBP7.06□□□□□ -1.28
LIMA1-202ENST00000394943 DNALI1O14645 258 aaPredicted RBP7.06□□□□□ -1.28
LIMA1-202ENST00000394943 LZTS3O60299 673 aaPredicted RBP7.06□□□□□ -1.28
LIMA1-202ENST00000394943 CEP104O60308 925 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 CLCNKAP51800 687 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 ZNF140P52738 457 aaPredicted RBP7.06□□□□□ -1.28
LIMA1-202ENST00000394943 NAP1L1P55209 391 aaKnown RBP7.06□□□□□ -1.28
LIMA1-202ENST00000394943 POLR2LP62875 67 aaKnown RBP7.06□□□□□ -1.28
LIMA1-202ENST00000394943 SLC1A5Q15758 541 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 KIAA0895LQ68EN5 471 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 ESRP1Q6NXG1 681 aaKnown RBP7.06□□□□□ -1.28
LIMA1-202ENST00000394943 LINGO4Q6UY18 593 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 LINC00523Q86TU6 105 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 ST13P5Q8NFI4 369 aaPredicted RBP7.06□□□□□ -1.28
LIMA1-202ENST00000394943 NSMCE1Q8WV22 266 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 PLEKHG4BQ96PX9 1271 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 INSM2Q96T92 566 aaPredicted RBP7.06□□□□□ -1.28
LIMA1-202ENST00000394943 HEMGNQ9BXL5 484 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 TXLNGYQ9BZA5 131 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 SCUBE2Q9NQ36 999 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 GDF3Q9NR23 364 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 GRHL1Q9NZI5 618 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 SHOC2Q9UQ13 582 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 HCN4Q9Y3Q4 1203 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 IGLV3-16A0A075B6K0 115 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 AXIN1O15169 862 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 HEXIM1O94992 359 aaKnown RBP7.06□□□□□ -1.28
LIMA1-202ENST00000394943 SOD1P00441 154 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 PYGLP06737 847 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 EPHX1P07099 455 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 DCNP07585 359 aaKnown RBP7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms