RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 CRYL1Q9Y2S2 319 aa15.18■□□□□ 0.02
GPC3-202ENST00000394299 NEMP2A6NFY4 417 aa15.18■□□□□ 0.02
GPC3-202ENST00000394299 SNAP91O60641 907 aa15.18■□□□□ 0.02
GPC3-202ENST00000394299 GM2AP17900 193 aa15.18■□□□□ 0.02
GPC3-202ENST00000394299 NAGLUP54802 743 aa15.18■□□□□ 0.02
GPC3-202ENST00000394299 CDH4P55283 916 aa15.18■□□□□ 0.02
GPC3-202ENST00000394299 CSHL1Q14406 222 aa15.18■□□□□ 0.02
GPC3-202ENST00000394299 UGP2Q16851 508 aa15.18■□□□□ 0.02
GPC3-202ENST00000394299 LRRC26Q2I0M4 334 aa15.18■□□□□ 0.02
GPC3-202ENST00000394299 LRRC8EQ6NSJ5 796 aa15.18■□□□□ 0.02
GPC3-202ENST00000394299 DDX51Q8N8A6 666 aaKnown RBP eCLIP15.18■□□□□ 0.02
GPC3-202ENST00000394299 MAPK15Q8TD08 544 aa15.18■□□□□ 0.02
GPC3-202ENST00000394299 PPP4R1Q8TF05 950 aa15.18■□□□□ 0.02
GPC3-202ENST00000394299 HEXDCQ8WVB3 486 aa15.18■□□□□ 0.02
GPC3-202ENST00000394299 FAM136AQ96C01 138 aa15.18■□□□□ 0.02
GPC3-202ENST00000394299 LBHD1Q9BQE6 289 aaPredicted RBP15.18■□□□□ 0.02
GPC3-202ENST00000394299 KLF16Q9BXK1 252 aaPredicted RBP15.18■□□□□ 0.02
GPC3-202ENST00000394299 LNPEPQ9UIQ6 1025 aa15.18■□□□□ 0.02
GPC3-202ENST00000394299 PDE4DIPQ5VU43 2346 aa15.17■□□□□ 0.02
GPC3-202ENST00000394299 KIAA0100Q14667 2235 aaKnown RBP15.17■□□□□ 0.02
GPC3-202ENST00000394299 TRIM43BA6NCK2 446 aa15.17■□□□□ 0.02
GPC3-202ENST00000394299 TARM1B6A8C7 271 aa15.17■□□□□ 0.02
GPC3-202ENST00000394299 NRG2O14511 850 aaPredicted RBP15.17■□□□□ 0.02
GPC3-202ENST00000394299 TRAFD1O14545 582 aaPredicted RBP15.17■□□□□ 0.02
GPC3-202ENST00000394299 DLX3O60479 287 aa15.17■□□□□ 0.02
GPC3-202ENST00000394299 HSPA4LO95757 839 aa15.17■□□□□ 0.02
GPC3-202ENST00000394299 PDHA1P08559 390 aa15.17■□□□□ 0.02
GPC3-202ENST00000394299 GRIA4P48058 902 aa15.17■□□□□ 0.02
GPC3-202ENST00000394299 TNK2Q07912 1038 aa15.17■□□□□ 0.02
GPC3-202ENST00000394299 DBN1Q16643 649 aa15.17■□□□□ 0.02
GPC3-202ENST00000394299 EML3Q32P44 896 aa15.17■□□□□ 0.02
GPC3-202ENST00000394299 SPDYAQ5MJ70 313 aa15.17■□□□□ 0.02
GPC3-202ENST00000394299 RNF219Q5W0B1 726 aaPredicted RBP15.17■□□□□ 0.02
GPC3-202ENST00000394299 ARL14EPQ8N8R7 260 aaPredicted RBP15.17■□□□□ 0.02
GPC3-202ENST00000394299 PDZD8Q8NEN9 1154 aa15.17■□□□□ 0.02
GPC3-202ENST00000394299 TRIM43Q96BQ3 446 aaPredicted RBP15.17■□□□□ 0.02
GPC3-202ENST00000394299 MYRFLQ96LU7 910 aa15.17■□□□□ 0.02
GPC3-202ENST00000394299 BTBD10Q9BSF8 475 aa15.17■□□□□ 0.02
GPC3-202ENST00000394299 CCDC106Q9BWC9 280 aa15.17■□□□□ 0.02
GPC3-202ENST00000394299 MAGEH1Q9H213 219 aa15.17■□□□□ 0.02
GPC3-202ENST00000394299 PCDHB12Q9Y5F1 795 aa15.17■□□□□ 0.02
GPC3-202ENST00000394299 PCDHGC4Q9Y5F7 938 aa15.17■□□□□ 0.02
GPC3-202ENST00000394299 DIAPH2O60879 1101 aa15.17■□□□□ 0.02
GPC3-202ENST00000394299 SLC4A1P02730 911 aa15.17■□□□□ 0.02
GPC3-202ENST00000394299 RHOCP08134 193 aa15.17■□□□□ 0.02
GPC3-202ENST00000394299 MBL2P11226 248 aaPredicted RBP15.17■□□□□ 0.02
GPC3-202ENST00000394299 BMP1P13497 986 aa15.17■□□□□ 0.02
GPC3-202ENST00000394299 CD1EP15812 388 aa15.17■□□□□ 0.02
GPC3-202ENST00000394299 MPSTP25325 297 aa15.17■□□□□ 0.02
GPC3-202ENST00000394299 OXCT1P55809 520 aa15.17■□□□□ 0.02
GPC3-202ENST00000394299 PRAMEP78395 509 aa15.17■□□□□ 0.02
GPC3-202ENST00000394299 SEMA3AQ14563 771 aa15.17■□□□□ 0.02
GPC3-202ENST00000394299 CYTH1Q15438 398 aa15.17■□□□□ 0.02
GPC3-202ENST00000394299 ADGRF1Q5T601 910 aa15.17■□□□□ 0.02
GPC3-202ENST00000394299 RPS27LQ71UM5 84 aaKnown RBP15.17■□□□□ 0.02
GPC3-202ENST00000394299 CILP2Q8IUL8 1156 aa15.17■□□□□ 0.02
GPC3-202ENST00000394299 STYXQ8WUJ0 223 aa15.17■□□□□ 0.02
GPC3-202ENST00000394299 ANKRD49Q8WVL7 239 aa15.17■□□□□ 0.02
GPC3-202ENST00000394299 PAWRQ96IZ0 340 aaKnown RBP15.17■□□□□ 0.02
GPC3-202ENST00000394299 RAB3IPQ96QF0 476 aaPredicted RBP15.17■□□□□ 0.02
GPC3-202ENST00000394299 RANBP9Q96S59 729 aa15.17■□□□□ 0.02
GPC3-202ENST00000394299 FAM167BQ9BTA0 163 aa15.17■□□□□ 0.02
GPC3-202ENST00000394299 CRISPLD2Q9H0B8 497 aa15.17■□□□□ 0.02
GPC3-202ENST00000394299 COG4Q9H9E3 785 aa15.17■□□□□ 0.02
GPC3-202ENST00000394299 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP15.17■□□□□ 0.024e-7■■■■■ 34.4
GPC3-202ENST00000394299 UBA2Q9UBT2 640 aaPredicted RBP15.17■□□□□ 0.02
GPC3-202ENST00000394299 SPO11Q9Y5K1 396 aa15.17■□□□□ 0.02
GPC3-202ENST00000394299 TANC1Q9C0D5 1861 aa15.16■□□□□ 0.02
GPC3-202ENST00000394299 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP15.16■□□□□ 0.02
GPC3-202ENST00000394299 B2RBV5 119 aa15.16■□□□□ 0.02
GPC3-202ENST00000394299 TEX28O15482 410 aa15.16■□□□□ 0.02
GPC3-202ENST00000394299 GYG2O15488 501 aa15.16■□□□□ 0.02
GPC3-202ENST00000394299 GSC2O15499 205 aa15.16■□□□□ 0.02
GPC3-202ENST00000394299 KDELR3O43731 214 aa15.16■□□□□ 0.02
GPC3-202ENST00000394299 CCDC22O60826 627 aa15.16■□□□□ 0.02
GPC3-202ENST00000394299 CLTBP09497 229 aa15.16■□□□□ 0.02
GPC3-202ENST00000394299 MZF1P28698 734 aaPredicted RBP15.16■□□□□ 0.02
GPC3-202ENST00000394299 HADHAP40939 763 aa15.16■□□□□ 0.02
GPC3-202ENST00000394299 RASSF2P50749 326 aa15.16■□□□□ 0.02
GPC3-202ENST00000394299 CDKN2DP55273 166 aa15.16■□□□□ 0.02
GPC3-202ENST00000394299 SMAD3P84022 425 aaKnown RBP15.16■□□□□ 0.02
GPC3-202ENST00000394299 ZNF177Q13360 481 aaPredicted RBP15.16■□□□□ 0.02
GPC3-202ENST00000394299 RIPK1Q13546 671 aa15.16■□□□□ 0.02
GPC3-202ENST00000394299 KRT72Q14CN4 511 aa15.16■□□□□ 0.02
GPC3-202ENST00000394299 SLC9B1Q4ZJI4 515 aa15.16■□□□□ 0.02
GPC3-202ENST00000394299 RABGAP1LQ5R372 815 aa15.16■□□□□ 0.02
GPC3-202ENST00000394299 TMEM207Q6UWW9 146 aa15.16■□□□□ 0.02
GPC3-202ENST00000394299 ZYG11AQ6WRX3 759 aa15.16■□□□□ 0.02
GPC3-202ENST00000394299 OTOP2Q7RTS6 562 aa15.16■□□□□ 0.02
GPC3-202ENST00000394299 PIM3Q86V86 326 aa15.16■□□□□ 0.02
GPC3-202ENST00000394299 TTC8Q8TAM2 541 aa15.16■□□□□ 0.02
GPC3-202ENST00000394299 ZFRQ96KR1 1074 aaKnown RBP15.16■□□□□ 0.02
GPC3-202ENST00000394299 CDK5RAP1Q96SZ6 601 aaKnown RBP15.16■□□□□ 0.02
GPC3-202ENST00000394299 ZBED2Q9BTP6 218 aa15.16■□□□□ 0.02
GPC3-202ENST00000394299 RC3H2Q9HBD1 1191 aaKnown RBP15.16■□□□□ 0.02
GPC3-202ENST00000394299 ANKRD6Q9Y2G4 727 aa15.16■□□□□ 0.02
GPC3-202ENST00000394299 KLHL2O95198 593 aa15.16■□□□□ 0.02
GPC3-202ENST00000394299 PARNO95453 639 aaKnown RBP15.16■□□□□ 0.02
GPC3-202ENST00000394299 CD160O95971 181 aa15.16■□□□□ 0.02
GPC3-202ENST00000394299 S1PR4O95977 384 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms