RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 S100A14Q9HCY8 104 aa13.48□□□□□ -0.25
CCDC3-202ENST00000378839 SPATS2LQ9NUQ6 558 aaKnown RBP13.48□□□□□ -0.25
CCDC3-202ENST00000378839 ADAMTS6Q9UKP5 1117 aa13.48□□□□□ -0.25
CCDC3-202ENST00000378839 POMPQ9Y244 141 aa13.48□□□□□ -0.25
CCDC3-202ENST00000378839 MROH6A6NGR9 719 aa13.48□□□□□ -0.25
CCDC3-202ENST00000378839 NT5C1B-RDH14C9J2C7 533 aa13.48□□□□□ -0.25
CCDC3-202ENST00000378839 TADA2AO75478 443 aa13.48□□□□□ -0.25
CCDC3-202ENST00000378839 CIB2O75838 187 aa13.48□□□□□ -0.25
CCDC3-202ENST00000378839 RPLP2P05387 115 aaKnown RBP13.48□□□□□ -0.25
CCDC3-202ENST00000378839 DPP6P42658 865 aa13.48□□□□□ -0.25
CCDC3-202ENST00000378839 NDST2P52849 883 aa13.48□□□□□ -0.25
CCDC3-202ENST00000378839 SEL1L3Q68CR1 1132 aa13.48□□□□□ -0.25
CCDC3-202ENST00000378839 HIPK4Q8NE63 616 aa13.48□□□□□ -0.25
CCDC3-202ENST00000378839 ZNF483Q8TF39 744 aaPredicted RBP13.48□□□□□ -0.25
CCDC3-202ENST00000378839 CMTM5Q96DZ9 223 aa13.48□□□□□ -0.25
CCDC3-202ENST00000378839 CYP4F12Q9HCS2 524 aa13.48□□□□□ -0.25
CCDC3-202ENST00000378839 LDB2O43679 373 aa13.48□□□□□ -0.25
CCDC3-202ENST00000378839 WISP3O95389 354 aaPredicted RBP13.48□□□□□ -0.25
CCDC3-202ENST00000378839 BAG2O95816 211 aa13.48□□□□□ -0.25
CCDC3-202ENST00000378839 IGLV3-27P01718 113 aa13.48□□□□□ -0.25
CCDC3-202ENST00000378839 APOA4P06727 396 aa13.48□□□□□ -0.25
CCDC3-202ENST00000378839 COL6A2P12110 1019 aa13.48□□□□□ -0.25
CCDC3-202ENST00000378839 MSX2P35548 267 aaPredicted RBP13.48□□□□□ -0.25
CCDC3-202ENST00000378839 LEPRP48357 1165 aaKnown RBP13.48□□□□□ -0.25
CCDC3-202ENST00000378839 SERPINH1P50454 418 aaKnown RBP13.48□□□□□ -0.25
CCDC3-202ENST00000378839 KCNQ1P51787 676 aa13.48□□□□□ -0.25
CCDC3-202ENST00000378839 TBL3Q12788 808 aaKnown RBP13.48□□□□□ -0.25
CCDC3-202ENST00000378839 MARC1Q5VT66 337 aa13.48□□□□□ -0.25
CCDC3-202ENST00000378839 PIM3Q86V86 326 aa13.48□□□□□ -0.25
CCDC3-202ENST00000378839 SNX32Q86XE0 403 aa13.48□□□□□ -0.25
CCDC3-202ENST00000378839 DCP1BQ8IZD4 617 aaKnown RBP13.48□□□□□ -0.25
CCDC3-202ENST00000378839 CFAP52Q8N1V2 620 aa13.48□□□□□ -0.25
CCDC3-202ENST00000378839 PCSK9Q8NBP7 692 aaKnown RBP13.48□□□□□ -0.25
CCDC3-202ENST00000378839 FUBP3Q96I24 572 aaKnown RBP eCLIP13.48□□□□□ -0.25
CCDC3-202ENST00000378839 UBE2OQ9C0C9 1292 aaKnown RBP13.48□□□□□ -0.25
CCDC3-202ENST00000378839 POMKQ9H5K3 350 aa13.48□□□□□ -0.25
CCDC3-202ENST00000378839 FAM96AQ9H5X1 160 aa13.48□□□□□ -0.25
CCDC3-202ENST00000378839 PCDHB5Q9Y5E4 795 aa13.48□□□□□ -0.25
CCDC3-202ENST00000378839 GREB1Q4ZG55 1949 aa13.47□□□□□ -0.25
CCDC3-202ENST00000378839 DPPA5A6NC42 116 aa13.47□□□□□ -0.25
CCDC3-202ENST00000378839 H2AFYO75367 372 aaKnown RBP13.47□□□□□ -0.25
CCDC3-202ENST00000378839 PRSS56P0CW18 603 aa13.47□□□□□ -0.25
CCDC3-202ENST00000378839 PLK1P53350 603 aa13.47□□□□□ -0.25
CCDC3-202ENST00000378839 SEMA3AQ14563 771 aa13.47□□□□□ -0.25
CCDC3-202ENST00000378839 UGP2Q16851 508 aa13.47□□□□□ -0.25
CCDC3-202ENST00000378839 TECRLQ5HYJ1 363 aa13.47□□□□□ -0.25
CCDC3-202ENST00000378839 RTP2Q5QGT7 225 aa13.47□□□□□ -0.25
CCDC3-202ENST00000378839 MAP3K21Q5TCX8 1036 aa13.47□□□□□ -0.25
CCDC3-202ENST00000378839 TRIM67Q6ZTA4 783 aa13.47□□□□□ -0.25
CCDC3-202ENST00000378839 CILP2Q8IUL8 1156 aa13.47□□□□□ -0.25
CCDC3-202ENST00000378839 HMGCLL1Q8TB92 370 aa13.47□□□□□ -0.25
CCDC3-202ENST00000378839 BCL7CQ8WUZ0 217 aaPredicted RBP13.47□□□□□ -0.25
CCDC3-202ENST00000378839 GPAMQ9HCL2 828 aa13.47□□□□□ -0.25
CCDC3-202ENST00000378839 VPS45Q9NRW7 570 aa13.47□□□□□ -0.25
CCDC3-202ENST00000378839 UXTQ9UBK9 157 aaPredicted RBP13.47□□□□□ -0.25
CCDC3-202ENST00000378839 SQORQ9Y6N5 450 aa13.47□□□□□ -0.25
CCDC3-202ENST00000378839 A0A0D9SEW6 157 aa13.47□□□□□ -0.25
CCDC3-202ENST00000378839 DRGXA6NNA5 263 aa13.47□□□□□ -0.25
CCDC3-202ENST00000378839 H3BNX3 289 aa13.47□□□□□ -0.25
CCDC3-202ENST00000378839 NBNO60934 754 aa13.47□□□□□ -0.25
CCDC3-202ENST00000378839 LINGO3P0C6S8 592 aa13.47□□□□□ -0.25
CCDC3-202ENST00000378839 PIRTP0C851 137 aa13.47□□□□□ -0.25
CCDC3-202ENST00000378839 PAX3P23760 479 aa13.47□□□□□ -0.25
CCDC3-202ENST00000378839 YWHAQP27348 245 aa13.47□□□□□ -0.25
CCDC3-202ENST00000378839 CRABP2P29373 138 aa13.47□□□□□ -0.25
CCDC3-202ENST00000378839 RENBPP51606 427 aa13.47□□□□□ -0.25
CCDC3-202ENST00000378839 PRKAA1Q13131 559 aa13.47□□□□□ -0.25
CCDC3-202ENST00000378839 METTL21CQ5VZV1 264 aa13.47□□□□□ -0.25
CCDC3-202ENST00000378839 PHC3Q8NDX5 983 aa13.47□□□□□ -0.25
CCDC3-202ENST00000378839 FBXO32Q969P5 355 aa13.47□□□□□ -0.25
CCDC3-202ENST00000378839 HDAC10Q969S8 669 aa13.47□□□□□ -0.25
CCDC3-202ENST00000378839 CNDP1Q96KN2 507 aa13.47□□□□□ -0.25
CCDC3-202ENST00000378839 SMIM14Q96QK8 99 aa13.47□□□□□ -0.25
CCDC3-202ENST00000378839 MRPL46Q9H2W6 279 aaKnown RBP13.47□□□□□ -0.25
CCDC3-202ENST00000378839 FBXO44Q9H4M3 255 aa13.47□□□□□ -0.25
CCDC3-202ENST00000378839 BATF3Q9NR55 127 aa13.47□□□□□ -0.25
CCDC3-202ENST00000378839 MARCH2Q9P0N8 246 aa13.47□□□□□ -0.25
CCDC3-202ENST00000378839 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.47□□□□□ -0.25
CCDC3-202ENST00000378839 ABT1Q9ULW3 272 aaKnown RBP13.47□□□□□ -0.25
CCDC3-202ENST00000378839 ARL5AQ9Y689 179 aa13.47□□□□□ -0.25
CCDC3-202ENST00000378839 SLC12A8A0AV02 714 aa13.46□□□□□ -0.25
CCDC3-202ENST00000378839 MTMR11A4FU01 709 aa13.46□□□□□ -0.25
CCDC3-202ENST00000378839 UBFD1O14562 309 aaKnown RBP13.46□□□□□ -0.25
CCDC3-202ENST00000378839 AIM2O14862 343 aa13.46□□□□□ -0.25
CCDC3-202ENST00000378839 S1PR4O95977 384 aa13.46□□□□□ -0.25
CCDC3-202ENST00000378839 C10orf120Q5SQS8 335 aa13.46□□□□□ -0.25
CCDC3-202ENST00000378839 FBXW8Q8N3Y1 598 aa13.46□□□□□ -0.25
CCDC3-202ENST00000378839 CPSF7Q8N684 471 aaKnown RBP13.46□□□□□ -0.25
CCDC3-202ENST00000378839 GIPC2Q8TF65 315 aa13.46□□□□□ -0.25
CCDC3-202ENST00000378839 UBXN10Q96LJ8 280 aa13.46□□□□□ -0.25
CCDC3-202ENST00000378839 CASD1Q96PB1 797 aa13.46□□□□□ -0.25
CCDC3-202ENST00000378839 RTKNQ9BST9 563 aa13.46□□□□□ -0.25
CCDC3-202ENST00000378839 CLIC5Q9NZA1 410 aa13.46□□□□□ -0.25
CCDC3-202ENST00000378839 LOC285095A0A1B0GVY8 99 aa13.46□□□□□ -0.25
CCDC3-202ENST00000378839 HEATR9A2RTY3 570 aa13.46□□□□□ -0.25
CCDC3-202ENST00000378839 STX16-NPEPL1H3BU86 382 aa13.46□□□□□ -0.25
CCDC3-202ENST00000378839 ADAM12O43184 909 aa13.46□□□□□ -0.25
CCDC3-202ENST00000378839 AOC2O75106 756 aa13.46□□□□□ -0.25
CCDC3-202ENST00000378839 PRDX6P30041 224 aa13.46□□□□□ -0.25
CCDC3-202ENST00000378839 SLC6A4P31645 630 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms