RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 SH3BP5O60239 455 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 PRAMEF10O60809 474 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 SLC43A1O75387 559 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 ERLIN2O94905 339 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 ABLIM3O94929 683 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 KRT14P02533 472 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 RPLP2P05387 115 aaKnown RBP5.01□□□□□ -1.61
USP48-202ENST00000374730 NUDT17P0C025 328 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 MYZAPP0CAP1 466 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 UNGP13051 313 aaPredicted RBP5.01□□□□□ -1.61
USP48-202ENST00000374730 NR1D1P20393 614 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 USP8P40818 1118 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 SLC1A1P43005 524 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 MARCKSL1P49006 195 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 LIG4P49917 911 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 POLGP54098 1239 aaPredicted RBP5.01□□□□□ -1.61
USP48-202ENST00000374730 CACNA2D1P54289 1103 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 EIF3BP55884 814 aaKnown RBP5.01□□□□□ -1.61
USP48-202ENST00000374730 GNGT1P63211 74 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 MRPS21P82921 87 aaKnown RBP5.01□□□□□ -1.61
USP48-202ENST00000374730 TLE1Q04724 770 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 ZNF844Q08AG5 666 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 PTP4A2Q12974 167 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 GRM1Q13255 1194 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 TRADDQ15628 312 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 STXBP2Q15833 593 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 CEP85LQ5SZL2 805 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 KIAA0895LQ68EN5 471 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 SWSAP1Q6NVH7 229 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 ZDHHC24Q6UX98 284 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 TRIM72Q6ZMU5 477 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 ZNF365Q70YC5 407 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 CLNKQ7Z7G1 428 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 CROCCP2Q86T23 111 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 ZBTB46Q86UZ6 589 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 SLC47A2Q86VL8 602 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 SLC13A5Q86YT5 568 aaPredicted RBP5.01□□□□□ -1.61
USP48-202ENST00000374730 PRELID2Q8N945 189 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 BOLLQ8N9W6 283 aaKnown RBP5.01□□□□□ -1.61
USP48-202ENST00000374730 PSPC1Q8WXF1 523 aaKnown RBP5.01□□□□□ -1.61
USP48-202ENST00000374730 SLCO2A1Q92959 643 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 RAB24Q969Q5 203 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 BICD1Q96G01 975 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 TEKT5Q96M29 485 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 FMO2Q99518 471 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 MPHOSPH6Q99547 160 aaKnown RBP5.01□□□□□ -1.61
USP48-202ENST00000374730 CGRRF1Q99675 332 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 PAGR1Q9BTK6 254 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 NUP85Q9BW27 656 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 FAM107BQ9H098 131 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 PORCNQ9H237 461 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 ERVK-5Q9HDB9 667 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 ZNF302Q9NR11 478 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 ZDHHC18Q9NUE0 388 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 GGA3Q9NZ52 723 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 CNTN6Q9UQ52 1028 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 PCDHA3Q9Y5H8 950 aa5.01□□□□□ -1.61
USP48-202ENST00000374730 CFAP20Q9Y6A4 193 aaKnown RBP5.01□□□□□ -1.61
USP48-202ENST00000374730 ADGRA2Q96PE1 1338 aa5□□□□□ -1.61
USP48-202ENST00000374730 PLXNB2O15031 1838 aa5□□□□□ -1.61
USP48-202ENST00000374730 CCDC154A6NI56 674 aa5□□□□□ -1.61
USP48-202ENST00000374730 MYO1FO00160 1098 aa5□□□□□ -1.61
USP48-202ENST00000374730 PROM1O43490 865 aa5□□□□□ -1.61
USP48-202ENST00000374730 SPOPO43791 374 aa5□□□□□ -1.61
USP48-202ENST00000374730 AGFG2O95081 481 aa5□□□□□ -1.61
USP48-202ENST00000374730 C1RP00736 705 aa5□□□□□ -1.61
USP48-202ENST00000374730 HLA-DRAP01903 254 aa5□□□□□ -1.61
USP48-202ENST00000374730 CD1AP06126 327 aa5□□□□□ -1.61
USP48-202ENST00000374730 PAEPP09466 180 aa5□□□□□ -1.61
USP48-202ENST00000374730 CLTAP09496 248 aa5□□□□□ -1.61
USP48-202ENST00000374730 SBK3P0C264 359 aa5□□□□□ -1.61
USP48-202ENST00000374730 DLATP10515 647 aaKnown RBP5□□□□□ -1.61
USP48-202ENST00000374730 KRT5P13647 590 aa5□□□□□ -1.61
USP48-202ENST00000374730 UBA1P22314 1058 aaKnown RBP5□□□□□ -1.61
USP48-202ENST00000374730 GLRA2P23416 452 aa5□□□□□ -1.61
USP48-202ENST00000374730 PAX3P23760 479 aa5□□□□□ -1.61
USP48-202ENST00000374730 TBXAS1P24557 533 aaPredicted RBP5□□□□□ -1.61
USP48-202ENST00000374730 MAN1A1P33908 653 aa5□□□□□ -1.61
USP48-202ENST00000374730 COPB2P35606 906 aa5□□□□□ -1.61
USP48-202ENST00000374730 COILP38432 576 aaPredicted RBP5□□□□□ -1.61
USP48-202ENST00000374730 MDH1P40925 334 aaKnown RBP5□□□□□ -1.61
USP48-202ENST00000374730 FOLR3P41439 243 aa5□□□□□ -1.61
USP48-202ENST00000374730 PIK3CAP42336 1068 aa5□□□□□ -1.61
USP48-202ENST00000374730 ALDH5A1P51649 535 aaPredicted RBP5□□□□□ -1.61
USP48-202ENST00000374730 ZNF132P52740 706 aa5□□□□□ -1.61
USP48-202ENST00000374730 AP3M2P53677 418 aa5□□□□□ -1.61
USP48-202ENST00000374730 SOX10P56693 466 aa5□□□□□ -1.61
USP48-202ENST00000374730 RWDD2BP57060 319 aa5□□□□□ -1.61
USP48-202ENST00000374730 NLRP11P59045 1033 aaKnown RBP5□□□□□ -1.61
USP48-202ENST00000374730 C1QTNF8P60827 252 aa5□□□□□ -1.61
USP48-202ENST00000374730 RPS7P62081 194 aaKnown RBP5□□□□□ -1.61
USP48-202ENST00000374730 ITKQ08881 620 aa5□□□□□ -1.61
USP48-202ENST00000374730 CUL2Q13617 745 aa5□□□□□ -1.61
USP48-202ENST00000374730 NEDD9Q14511 834 aa5□□□□□ -1.61
USP48-202ENST00000374730 MESDQ14696 234 aa5□□□□□ -1.61
USP48-202ENST00000374730 MLC1Q15049 377 aa5□□□□□ -1.61
USP48-202ENST00000374730 SIX1Q15475 284 aaPredicted RBP5□□□□□ -1.61
USP48-202ENST00000374730 C3orf36Q3SXR2 165 aa5□□□□□ -1.61
USP48-202ENST00000374730 DNAJC21Q5F1R6 531 aaKnown RBP5□□□□□ -1.61
USP48-202ENST00000374730 SYCP2LQ5T4T6 812 aa5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms