RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 TDRD1Q9BXT4 1180 aaKnown RBP4.06□□□□□ -1.76
LIG4-201ENST00000356922 OSBPL6Q9BZF3 934 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 SLC25A51Q9H1U9 297 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 GBA3Q9H227 469 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 LRRC4CQ9HCJ2 640 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 SHOC2Q9UQ13 582 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 NPIPB15A6NHN6 443 aaPredicted RBP4.06□□□□□ -1.76
LIG4-201ENST00000356922 C16orf96A6NNT2 1141 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 KIF2AO00139 706 aaPredicted RBP4.06□□□□□ -1.76
LIG4-201ENST00000356922 TNFRSF10AO00220 468 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 KPNA3O00505 521 aaPredicted RBP4.06□□□□□ -1.76
LIG4-201ENST00000356922 FAM153BP0C7A2 387 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 PRSS56P0CW18 603 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 HNF1BP35680 557 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 PSMD8P48556 350 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 FNTAP49354 379 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 TPMTP51580 245 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 GUCY2DQ02846 1103 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 FGL2Q14314 439 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 ELAVL3Q14576 367 aaKnown RBP4.06□□□□□ -1.76
LIG4-201ENST00000356922 KCNJ11Q14654 390 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 FAM153CQ494X1 144 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 SIRPB2Q5JXA9 342 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 PIP5KL1Q5T9C9 394 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 RNASEH2BQ5TBB1 312 aaKnown RBP4.06□□□□□ -1.76
LIG4-201ENST00000356922 AGBL4Q5VU57 503 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 KCTD16Q68DU8 428 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 TIGD7Q6NT04 549 aaPredicted RBP4.06□□□□□ -1.76
LIG4-201ENST00000356922 CES3Q6UWW8 571 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP4.06□□□□□ -1.76
LIG4-201ENST00000356922 BZW1Q7L1Q6 419 aaKnown RBP4.06□□□□□ -1.76
LIG4-201ENST00000356922 CDKL3Q8IVW4 592 aaPredicted RBP4.06□□□□□ -1.76
LIG4-201ENST00000356922 MMGT1Q8N4V1 131 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 PCDH20Q8N6Y1 951 aaKnown RBP4.06□□□□□ -1.76
LIG4-201ENST00000356922 NSMCE1Q8WV22 266 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 CASKIN2Q8WXE0 1202 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 HEPHQ9BQS7 1158 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 ERP44Q9BS26 406 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 POLR1EQ9GZS1 481 aaKnown RBP4.06□□□□□ -1.76
LIG4-201ENST00000356922 SUV39H2Q9H5I1 410 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 RNF14Q9UBS8 474 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 IL36AQ9UHA7 158 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 FAM153AQ9UHL3 310 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 RSPH14Q9UHP6 348 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 CABIN1Q9Y6J0 2220 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 LRRK1Q38SD2 2015 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 PTPRZ1P23471 2315 aaPredicted RBP4.06□□□□□ -1.76
LIG4-201ENST00000356922 SPTBN4Q9H254 2564 aa4.06□□□□□ -1.76
LIG4-201ENST00000356922 EDDM13A0A1B0GTR0 161 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 ANKRD66B4E2M5 251 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 SEC31AO94979 1220 aaKnown RBP4.05□□□□□ -1.76
LIG4-201ENST00000356922 ECEL1O95672 775 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 POP4O95707 220 aaKnown RBP4.05□□□□□ -1.76
LIG4-201ENST00000356922 ASLP04424 464 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 AVPR2P30518 371 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 ADCY8P40145 1251 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 NNMTP40261 264 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 RPS9P46781 194 aaKnown RBP4.05□□□□□ -1.76
LIG4-201ENST00000356922 ST8SIA6P61647 398 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 BASP1P80723 227 aaKnown RBP4.05□□□□□ -1.76
LIG4-201ENST00000356922 PTSQ03393 145 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 SEMA5AQ13591 1074 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 PTK6Q13882 451 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 RFTN1Q14699 578 aaPredicted RBP4.05□□□□□ -1.76
LIG4-201ENST00000356922 CST6Q15828 149 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 UGP2Q16851 508 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 PARP6Q2NL67 630 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 FBXO43Q4G163 708 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 GDPD4Q6W3E5 623 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 TTC7BQ86TV6 843 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 SPEM1Q8N4L4 309 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 FBXO25Q8TCJ0 367 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 KLK6Q92876 244 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 SHDQ96IW2 340 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 CPEB1Q9BZB8 566 aaKnown RBP4.05□□□□□ -1.76
LIG4-201ENST00000356922 CEP44Q9C0F1 390 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 PRDM16Q9HAZ2 1276 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 EPB41L5Q9HCM4 733 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 SCUBE2Q9NQ36 999 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 ZDHHC18Q9NUE0 388 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 SLC2A6Q9UGQ3 507 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 MBD1Q9UIS9 605 aaPredicted RBP4.05□□□□□ -1.76
LIG4-201ENST00000356922 SLC8A2Q9UPR5 921 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 COQ6Q9Y2Z9 468 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 TRPM6Q9BX84 2022 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 CTAGE15A4D2H0 777 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 PRR23AA6NEV1 266 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 FAM47DPA6NHR8 397 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 K7ESM1 405 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 OPHN1O60890 802 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 PGLSO95336 258 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 CLDN7O95471 211 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 TUBB4AP04350 444 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 CTAGE8P0CG41 777 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 ALADP13716 330 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 BCKDHBP21953 392 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 ITGA8P53708 1063 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 SNRPD1P62314 119 aaKnown RBP4.05□□□□□ -1.76
LIG4-201ENST00000356922 CDK18Q07002 472 aa4.05□□□□□ -1.76
LIG4-201ENST00000356922 SLC1A5Q15758 541 aa4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms