RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 UNGP13051 313 aaPredicted RBP10.23□□□□□ -0.77
USP54-201ENST00000339859 HCAR3P49019 387 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 NCALDP61601 193 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 ILF3Q12906 894 aaKnown RBP eCLIP10.23□□□□□ -0.779e-9■■■■■ 29.8
USP54-201ENST00000339859 TAF8Q7Z7C8 310 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 PCDH20Q8N6Y1 951 aaKnown RBP10.23□□□□□ -0.77
USP54-201ENST00000339859 GID8Q9NWU2 228 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 NCKIPSDQ9NZQ3 722 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 PCDHB1Q9Y5F3 818 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 HEBP2Q9Y5Z4 205 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 LAMA4Q16363 1823 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 GSAPA4D1B5 854 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 HEPACAM2A8MVW5 462 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 LAMTOR5O43504 91 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 CFIP05156 583 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 GPC1P35052 558 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 SOX4Q06945 474 aaPredicted RBP10.23□□□□□ -0.77
USP54-201ENST00000339859 RALGPS1Q5JS13 557 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 RTP2Q5QGT7 225 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 C12orf76Q8N812 135 aaPredicted RBP10.23□□□□□ -0.77
USP54-201ENST00000339859 ZNF398Q8TD17 642 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 AP2M1Q96CW1 435 aa10.23□□□□□ -0.77
USP54-201ENST00000339859 WRAP53Q9BUR4 548 aaKnown RBP10.23□□□□□ -0.77
USP54-201ENST00000339859 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.23□□□□□ -0.77
USP54-201ENST00000339859 GNG14A0A1W2PPG7 69 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 FSCN2O14926 492 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 NPC1O15118 1278 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 TM9SF1O15321 606 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 CHI3L1P36222 383 aaPredicted RBP10.22□□□□□ -0.77
USP54-201ENST00000339859 RGS1Q08116 209 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 GDPD4Q6W3E5 623 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 PSMG2Q969U7 264 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 C17orf80Q9BSJ5 609 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 MRPL1Q9BYD6 325 aaKnown RBP10.22□□□□□ -0.77
USP54-201ENST00000339859 OPTCQ9UBM4 332 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 RHPN2P1A8MT19 583 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 KLHL2O95198 593 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 LCA5LO95447 670 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 ALDH18A1P54886 795 aaKnown RBP10.22□□□□□ -0.77
USP54-201ENST00000339859 MUM1Q2TAK8 710 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 MS4A13Q5J8X5 152 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 AADACL2Q6P093 401 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 ZNF852Q6ZMS4 543 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 ZC3H3Q8IXZ2 948 aaKnown RBP10.22□□□□□ -0.77
USP54-201ENST00000339859 STYXQ8WUJ0 223 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 KLHL29Q96CT2 875 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 BTBD1Q9H0C5 482 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 ZNF576Q9H609 170 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 SCN4AP35499 1836 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 TMEM120BA0PK00 339 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 VIPP01282 170 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 ANXA6P08133 673 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 HSPA14Q0VDF9 509 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 MOGSQ13724 837 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 NAA25Q14CX7 972 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 KBTBD12Q3ZCT8 623 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 HLA-DQA1Q5Y7H0 255 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 ZNF783Q6ZMS7 281 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 ZNF513Q8N8E2 541 aaPredicted RBP10.22□□□□□ -0.77
USP54-201ENST00000339859 OR2W6PQ8NHA6 318 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 USP6NLQ92738 828 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 NUS1Q96E22 293 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 ACOX2Q99424 681 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 CYP4F12Q9HCS2 524 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 SNX10Q9Y5X0 201 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 ANKDD1BA6NHY2 528 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 GYG2O15488 501 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 E2F6O75461 281 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 CPA3P15088 417 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 HNRNPDQ14103 355 aaKnown RBP10.22□□□□□ -0.77
USP54-201ENST00000339859 ZSCAN26Q16670 478 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 FAM111AQ96PZ2 611 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 FAM83DQ9H4H8 585 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 ACTR5Q9H9F9 607 aaPredicted RBP10.22□□□□□ -0.77
USP54-201ENST00000339859 CA14Q9ULX7 337 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 DNAJC16Q9Y2G8 782 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 MTO1Q9Y2Z2 717 aaKnown RBP10.22□□□□□ -0.77
USP54-201ENST00000339859 EVPLLA8MZ36 301 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 TCP11X1B4DZS4 312 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 COCHO43405 550 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 ETS1P14921 441 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 TPSB2P20231 275 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 TCEA2Q15560 299 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 TPSAB1Q15661 275 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 C6orf10Q5SRN2 563 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 LDLRAP1Q5SW96 308 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 DAB2IPQ5VWQ8 1189 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 RFWD2Q8NHY2 731 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 FBXO25Q8TCJ0 367 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 BRSK1Q8TDC3 778 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 SPDL1Q96EA4 605 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 CERS2Q96G23 380 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 IL12RB2Q99665 862 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 KIF17Q9P2E2 1029 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 ANGPTL2Q9UKU9 493 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 AKAP11Q9UKA4 1901 aa10.22□□□□□ -0.77
USP54-201ENST00000339859 RNF225M0QZC1 329 aaPredicted RBP10.21□□□□□ -0.77
USP54-201ENST00000339859 CUL3Q13618 768 aa10.21□□□□□ -0.77
USP54-201ENST00000339859 PLA2G4EQ3MJ16 856 aa10.21□□□□□ -0.77
USP54-201ENST00000339859 ESRP1Q6NXG1 681 aaKnown RBP10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms